RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 TMEM86AQ8N2M4 240 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 CCDC33Q8N5R6 958 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 TOP6BLQ8N6T0 577 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 TTC16Q8NEE8 873 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 DDX1Q92499 740 aaKnown RBP15.29■□□□□ 0.04
CPSF1-201ENST00000526271 FUBP3Q96I24 572 aaKnown RBP eCLIP15.29■□□□□ 0.04
CPSF1-201ENST00000526271 CHAMP1Q96JM3 812 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 ACCSQ96QU6 501 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 SYT15Q9BQS2 421 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 MRPL45Q9BRJ2 306 aaKnown RBP15.29■□□□□ 0.04
CPSF1-201ENST00000526271 TTLL2Q9BWV7 592 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 STK17AQ9UEE5 414 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 SMC3Q9UQE7 1217 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 KIF3AQ9Y496 699 aa15.29■□□□□ 0.04
CPSF1-201ENST00000526271 FREM2Q5SZK8 3169 aa15.28■□□□□ 0.04
CPSF1-201ENST00000526271 ITPR1Q14643 2758 aa15.28■□□□□ 0.04
CPSF1-201ENST00000526271 LEFTY2O00292 366 aa15.28■□□□□ 0.04
CPSF1-201ENST00000526271 HUS1O60921 280 aa15.28■□□□□ 0.04
CPSF1-201ENST00000526271 GCNT3O95395 438 aa15.28■□□□□ 0.04
CPSF1-201ENST00000526271 CAVIN2O95810 425 aa15.28■□□□□ 0.04
CPSF1-201ENST00000526271 CKMP06732 381 aa15.28■□□□□ 0.04
CPSF1-201ENST00000526271 BDNFP23560 247 aa15.28■□□□□ 0.04
CPSF1-201ENST00000526271 IFNAR2P48551 515 aa15.28■□□□□ 0.04
CPSF1-201ENST00000526271 SEC13P55735 322 aa15.28■□□□□ 0.04
CPSF1-201ENST00000526271 C2orf27AQ580R0 203 aa15.28■□□□□ 0.04
CPSF1-201ENST00000526271 PHTF2Q8N3S3 785 aa15.28■□□□□ 0.04
CPSF1-201ENST00000526271 OLIG1Q8TAK6 271 aa15.28■□□□□ 0.04
CPSF1-201ENST00000526271 WBP2Q969T9 261 aa15.28■□□□□ 0.04
CPSF1-201ENST00000526271 PCED1BQ96HM7 432 aa15.28■□□□□ 0.04
CPSF1-201ENST00000526271 ZFRQ96KR1 1074 aaKnown RBP15.28■□□□□ 0.04
CPSF1-201ENST00000526271 FNBP1Q96RU3 617 aa15.28■□□□□ 0.04
CPSF1-201ENST00000526271 UXTQ9UBK9 157 aaPredicted RBP15.28■□□□□ 0.04
CPSF1-201ENST00000526271 SEL1LQ9UBV2 794 aa15.28■□□□□ 0.04
CPSF1-201ENST00000526271 MBD1Q9UIS9 605 aaPredicted RBP15.28■□□□□ 0.04
CPSF1-201ENST00000526271 ITGA11Q9UKX5 1188 aa15.28■□□□□ 0.04
CPSF1-201ENST00000526271 SRPRBQ9Y5M8 271 aaKnown RBP15.28■□□□□ 0.04
CPSF1-201ENST00000526271 NBEAQ8NFP9 2946 aa15.27■□□□□ 0.04
CPSF1-201ENST00000526271 ZNF840PA6NDX5 716 aa15.27■□□□□ 0.04
CPSF1-201ENST00000526271 ADAM23O75077 832 aa15.27■□□□□ 0.04
CPSF1-201ENST00000526271 BMP15O95972 392 aa15.27■□□□□ 0.04
CPSF1-201ENST00000526271 CST3P01034 146 aaPredicted RBP15.27■□□□□ 0.04
CPSF1-201ENST00000526271 KRT19P08727 400 aa15.27■□□□□ 0.04
CPSF1-201ENST00000526271 HOXB3P14651 431 aaPredicted RBP15.27■□□□□ 0.04
CPSF1-201ENST00000526271 HDCP19113 662 aa15.27■□□□□ 0.04
CPSF1-201ENST00000526271 ABCD1P33897 745 aa15.27■□□□□ 0.04
CPSF1-201ENST00000526271 IRX4P78413 519 aa15.27■□□□□ 0.04
CPSF1-201ENST00000526271 RBP5P82980 135 aa15.27■□□□□ 0.04
CPSF1-201ENST00000526271 MYL7Q01449 175 aa15.27■□□□□ 0.04
CPSF1-201ENST00000526271 PSMD2Q13200 908 aa15.27■□□□□ 0.04
CPSF1-201ENST00000526271 CUL4AQ13619 759 aa15.27■□□□□ 0.04
CPSF1-201ENST00000526271 ANO7Q6IWH7 933 aa15.27■□□□□ 0.04
CPSF1-201ENST00000526271 RHBDF2Q6PJF5 856 aa15.27■□□□□ 0.04
CPSF1-201ENST00000526271 SPATA2LQ8IUW3 424 aaPredicted RBP15.27■□□□□ 0.04
CPSF1-201ENST00000526271 ADGRG2Q8IZP9 1017 aa15.27■□□□□ 0.04
CPSF1-201ENST00000526271 RASSF8Q8NHQ8 419 aa15.27■□□□□ 0.04
CPSF1-201ENST00000526271 SPATA18Q8TC71 538 aa15.27■□□□□ 0.04
CPSF1-201ENST00000526271 RLN3Q8WXF3 142 aa15.27■□□□□ 0.04
CPSF1-201ENST00000526271 ATP2A3Q93084 1043 aa15.27■□□□□ 0.04
CPSF1-201ENST00000526271 SPATA17Q96L03 361 aa15.27■□□□□ 0.04
CPSF1-201ENST00000526271 CNOT6LQ96LI5 555 aaKnown RBP15.27■□□□□ 0.04
CPSF1-201ENST00000526271 PANK2Q9BZ23 570 aa15.27■□□□□ 0.04
CPSF1-201ENST00000526271 DPEP3Q9H4B8 488 aa15.27■□□□□ 0.04
CPSF1-201ENST00000526271 TMEM74BQ9NUR3 256 aa15.27■□□□□ 0.04
CPSF1-201ENST00000526271 MMP17Q9ULZ9 603 aa15.27■□□□□ 0.04
CPSF1-201ENST00000526271 SGK1O00141 431 aa15.26■□□□□ 0.03
CPSF1-201ENST00000526271 TGFB1I1O43294 461 aa15.26■□□□□ 0.03
CPSF1-201ENST00000526271 OAS1P00973 400 aaKnown RBP15.26■□□□□ 0.03
CPSF1-201ENST00000526271 PROS1P07225 676 aa15.26■□□□□ 0.03
CPSF1-201ENST00000526271 PDGFRBP09619 1106 aa15.26■□□□□ 0.03
CPSF1-201ENST00000526271 GAP43P17677 238 aa15.26■□□□□ 0.03
CPSF1-201ENST00000526271 WARSP23381 471 aaKnown RBP15.26■□□□□ 0.03
CPSF1-201ENST00000526271 KIR2DL1P43626 348 aaPredicted RBP15.26■□□□□ 0.03
CPSF1-201ENST00000526271 LHX1P48742 406 aa15.26■□□□□ 0.03
CPSF1-201ENST00000526271 PGFP49763 221 aa15.26■□□□□ 0.03
CPSF1-201ENST00000526271 NOVA1P51513 510 aaKnown RBP15.26■□□□□ 0.03
CPSF1-201ENST00000526271 DGKEP52429 567 aa15.26■□□□□ 0.03
CPSF1-201ENST00000526271 SLC7A9P82251 487 aa15.26■□□□□ 0.03
CPSF1-201ENST00000526271 CRY1Q16526 586 aa15.26■□□□□ 0.03
CPSF1-201ENST00000526271 RRAGBQ5VZM2 374 aa15.26■□□□□ 0.03
CPSF1-201ENST00000526271 FILIP1Q7Z7B0 1213 aa15.26■□□□□ 0.03
CPSF1-201ENST00000526271 GPD1LQ8N335 351 aa15.26■□□□□ 0.03
CPSF1-201ENST00000526271 IL17RCQ8NAC3 791 aa15.26■□□□□ 0.03
CPSF1-201ENST00000526271 TSTD1Q8NFU3 115 aa15.26■□□□□ 0.03
CPSF1-201ENST00000526271 ZNF516Q92618 1163 aa15.26■□□□□ 0.03
CPSF1-201ENST00000526271 HPDLQ96IR7 371 aa15.26■□□□□ 0.03
CPSF1-201ENST00000526271 USP28Q96RU2 1077 aa15.26■□□□□ 0.03
CPSF1-201ENST00000526271 CELSR3Q9NYQ7 3312 aa15.25■□□□□ 0.03
CPSF1-201ENST00000526271 F8VP50 259 aa15.25■□□□□ 0.03
CPSF1-201ENST00000526271 DHCR24Q15392 516 aa15.25■□□□□ 0.03
CPSF1-201ENST00000526271 E2F4Q16254 413 aa15.25■□□□□ 0.03
CPSF1-201ENST00000526271 MAP7D1Q3KQU3 841 aa15.25■□□□□ 0.03
CPSF1-201ENST00000526271 SH3PXD2AQ5TCZ1 1133 aa15.25■□□□□ 0.03
CPSF1-201ENST00000526271 DENND5BQ6ZUT9 1274 aa15.25■□□□□ 0.03
CPSF1-201ENST00000526271 SV2BQ7L1I2 683 aa15.25■□□□□ 0.03
CPSF1-201ENST00000526271 EPM2AIP1Q7L775 607 aaPredicted RBP15.25■□□□□ 0.03
CPSF1-201ENST00000526271 ALLCQ8N6M5 410 aa15.25■□□□□ 0.03
CPSF1-201ENST00000526271 PLEKHO2Q8TD55 490 aa15.25■□□□□ 0.03
CPSF1-201ENST00000526271 CACTINQ8WUQ7 758 aaKnown RBP15.25■□□□□ 0.03
CPSF1-201ENST00000526271 ACDQ96AP0 544 aa15.25■□□□□ 0.03
CPSF1-201ENST00000526271 ELMO3Q96BJ8 720 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms