RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 SEMA4DQ92854 862 aa22.22■■□□□ 1.15
VPS28-203ENST00000524521 OSBPL6Q9BZF3 934 aa22.22■■□□□ 1.15
VPS28-203ENST00000524521 NIF3L1Q9GZT8 377 aa22.22■■□□□ 1.15
VPS28-203ENST00000524521 CYP3A43Q9HB55 503 aa22.22■■□□□ 1.15
VPS28-203ENST00000524521 TRPM5Q9NZQ8 1165 aa22.22■■□□□ 1.15
VPS28-203ENST00000524521 ARMCX3Q9UH62 379 aaPredicted RBP22.22■■□□□ 1.15
VPS28-203ENST00000524521 CCL26Q9Y258 94 aa22.22■■□□□ 1.15
VPS28-203ENST00000524521 PPP1R3GB7ZBB8 358 aa22.21■■□□□ 1.15
VPS28-203ENST00000524521 ARNTLO00327 626 aa22.21■■□□□ 1.15
VPS28-203ENST00000524521 CD58P19256 250 aa22.21■■□□□ 1.15
VPS28-203ENST00000524521 TARSP26639 723 aaKnown RBP22.21■■□□□ 1.15
VPS28-203ENST00000524521 KPNA1P52294 538 aaPredicted RBP22.21■■□□□ 1.15
VPS28-203ENST00000524521 IFRD2Q12894 506 aaPredicted RBP22.21■■□□□ 1.15
VPS28-203ENST00000524521 ANGPT1Q15389 498 aa22.21■■□□□ 1.15
VPS28-203ENST00000524521 NELFBQ8WX92 580 aa22.21■■□□□ 1.15
VPS28-203ENST00000524521 KCNK16Q96T55 309 aa22.21■■□□□ 1.15
VPS28-203ENST00000524521 PHOX2BQ99453 314 aa22.21■■□□□ 1.15
VPS28-203ENST00000524521 TTLL2Q9BWV7 592 aa22.21■■□□□ 1.15
VPS28-203ENST00000524521 GKN1Q9NS71 199 aa22.21■■□□□ 1.15
VPS28-203ENST00000524521 RAB20Q9NX57 234 aa22.21■■□□□ 1.15
VPS28-203ENST00000524521 NDRG2Q9UN36 371 aaKnown RBP22.21■■□□□ 1.15
VPS28-203ENST00000524521 TICRRQ7Z2Z1 1910 aa22.21■■□□□ 1.15
VPS28-203ENST00000524521 ZNF638Q14966 1978 aaKnown RBP22.21■■□□□ 1.15
VPS28-203ENST00000524521 OBSL1O75147 1896 aa22.2■■□□□ 1.14
VPS28-203ENST00000524521 GREB1Q4ZG55 1949 aa22.2■■□□□ 1.14
VPS28-203ENST00000524521 TRAV19A0A0A6YYK7 116 aa22.2■■□□□ 1.14
VPS28-203ENST00000524521 C2orf78A6NCI8 922 aa22.2■■□□□ 1.14
VPS28-203ENST00000524521 SHISA7A6NL88 538 aa22.2■■□□□ 1.14
VPS28-203ENST00000524521 NCAM2O15394 837 aa22.2■■□□□ 1.14
VPS28-203ENST00000524521 USP17L7P0C7H9 530 aa22.2■■□□□ 1.14
VPS28-203ENST00000524521 CCDC130P13994 396 aa22.2■■□□□ 1.14
VPS28-203ENST00000524521 TRIM21P19474 475 aaKnown RBP22.2■■□□□ 1.14
VPS28-203ENST00000524521 PLCB2Q00722 1185 aa22.2■■□□□ 1.14
VPS28-203ENST00000524521 CAMK4Q16566 473 aa22.2■■□□□ 1.14
VPS28-203ENST00000524521 WDR44Q5JSH3 913 aa22.2■■□□□ 1.14
VPS28-203ENST00000524521 ALYREFQ86V81 257 aaKnown RBP22.2■■□□□ 1.14
VPS28-203ENST00000524521 FUKQ8N0W3 1084 aa22.2■■□□□ 1.14
VPS28-203ENST00000524521 NUP93Q8N1F7 819 aa22.2■■□□□ 1.14
VPS28-203ENST00000524521 ARL14EPQ8N8R7 260 aaPredicted RBP22.2■■□□□ 1.14
VPS28-203ENST00000524521 C12orf29Q8N999 325 aa22.2■■□□□ 1.14
VPS28-203ENST00000524521 TTC16Q8NEE8 873 aa22.2■■□□□ 1.14
VPS28-203ENST00000524521 FAM3CQ92520 227 aa22.2■■□□□ 1.14
VPS28-203ENST00000524521 SLC22A12Q96S37 553 aa22.2■■□□□ 1.14
VPS28-203ENST00000524521 DUSP9Q99956 384 aaKnown RBP22.2■■□□□ 1.14
VPS28-203ENST00000524521 KIF9Q9HAQ2 790 aa22.2■■□□□ 1.14
VPS28-203ENST00000524521 FAM49BQ9NUQ9 324 aa22.2■■□□□ 1.14
VPS28-203ENST00000524521 AP1G2O75843 785 aa22.19■■□□□ 1.14
VPS28-203ENST00000524521 ABL1P00519 1130 aa22.19■■□□□ 1.14
VPS28-203ENST00000524521 CKMP06732 381 aa22.19■■□□□ 1.14
VPS28-203ENST00000524521 HDCP19113 662 aa22.19■■□□□ 1.14
VPS28-203ENST00000524521 INCA1Q0VD86 236 aa22.19■■□□□ 1.14
VPS28-203ENST00000524521 CBWD6Q4V339 395 aa22.19■■□□□ 1.14
VPS28-203ENST00000524521 CBWD3Q5JTY5 395 aa22.19■■□□□ 1.14
VPS28-203ENST00000524521 CBWD5Q5RIA9 395 aa22.19■■□□□ 1.14
VPS28-203ENST00000524521 FILIP1Q7Z7B0 1213 aa22.19■■□□□ 1.14
VPS28-203ENST00000524521 SLC2A14Q8TDB8 520 aa22.19■■□□□ 1.14
VPS28-203ENST00000524521 SMARCD1Q96GM5 515 aa22.19■■□□□ 1.14
VPS28-203ENST00000524521 CEP63Q96MT8 703 aa22.19■■□□□ 1.14
VPS28-203ENST00000524521 TWNKQ96RR1 684 aa22.19■■□□□ 1.14
VPS28-203ENST00000524521 NT5C1AQ9BXI3 368 aa22.19■■□□□ 1.14
VPS28-203ENST00000524521 C8orf33Q9H7E9 229 aaPredicted RBP22.19■■□□□ 1.14
VPS28-203ENST00000524521 METTL14Q9HCE5 456 aaKnown RBP22.19■■□□□ 1.14
VPS28-203ENST00000524521 DMAP1Q9NPF5 467 aaPredicted RBP22.19■■□□□ 1.14
VPS28-203ENST00000524521 GTSE1Q9NYZ3 720 aa22.19■■□□□ 1.14
VPS28-203ENST00000524521 CTNND2Q9UQB3 1225 aa22.19■■□□□ 1.14
VPS28-203ENST00000524521 MIA3Q5JRA6 1907 aa22.18■■□□□ 1.14
VPS28-203ENST00000524521 BICDL2A1A5D9 508 aa22.18■■□□□ 1.14
VPS28-203ENST00000524521 RTN3O95197 1032 aaPredicted RBP22.18■■□□□ 1.14
VPS28-203ENST00000524521 YWHAQP27348 245 aa22.18■■□□□ 1.14
VPS28-203ENST00000524521 SOX9P48436 509 aa22.18■■□□□ 1.14
VPS28-203ENST00000524521 PPP3CCP48454 512 aa22.18■■□□□ 1.14
VPS28-203ENST00000524521 MLLT6P55198 1093 aaPredicted RBP22.18■■□□□ 1.14
VPS28-203ENST00000524521 STX17P56962 302 aa22.18■■□□□ 1.14
VPS28-203ENST00000524521 TNK2Q07912 1038 aa22.18■■□□□ 1.14
VPS28-203ENST00000524521 TAF10Q12962 218 aa22.18■■□□□ 1.14
VPS28-203ENST00000524521 ZNF268Q14587 947 aaPredicted RBP22.18■■□□□ 1.14
VPS28-203ENST00000524521 CCDC40Q4G0X9 1142 aa22.18■■□□□ 1.14
VPS28-203ENST00000524521 TTI2Q6NXR4 508 aa22.18■■□□□ 1.14
VPS28-203ENST00000524521 CC2D1AQ6P1N0 951 aaPredicted RBP22.18■■□□□ 1.14
VPS28-203ENST00000524521 FRMD5Q7Z6J6 570 aa22.18■■□□□ 1.14
VPS28-203ENST00000524521 C1orf210Q8IVY1 113 aa22.18■■□□□ 1.14
VPS28-203ENST00000524521 TATDN2Q93075 761 aa22.18■■□□□ 1.14
VPS28-203ENST00000524521 SLITRK1Q96PX8 696 aa22.18■■□□□ 1.14
VPS28-203ENST00000524521 KRT82Q9NSB4 513 aa22.18■■□□□ 1.14
VPS28-203ENST00000524521 GCNT4Q9P109 453 aa22.18■■□□□ 1.14
VPS28-203ENST00000524521 KIAA1468Q9P260 1216 aa22.18■■□□□ 1.14
VPS28-203ENST00000524521 CILPO75339 1184 aa22.17■■□□□ 1.14
VPS28-203ENST00000524521 ADORA2BP29275 332 aa22.17■■□□□ 1.14
VPS28-203ENST00000524521 WHAMMQ8TF30 809 aa22.17■■□□□ 1.14
VPS28-203ENST00000524521 SLC35C1Q96A29 364 aa22.17■■□□□ 1.14
VPS28-203ENST00000524521 CLDN23Q96B33 292 aa22.17■■□□□ 1.14
VPS28-203ENST00000524521 CYFIP2Q96F07 1278 aa22.17■■□□□ 1.14
VPS28-203ENST00000524521 SMOQ99835 787 aa22.17■■□□□ 1.14
VPS28-203ENST00000524521 DNAI2Q9GZS0 605 aa22.17■■□□□ 1.14
VPS28-203ENST00000524521 SPATA6Q9NWH7 488 aaPredicted RBP22.17■■□□□ 1.14
VPS28-203ENST00000524521 COL4A2P08572 1712 aa22.17■■□□□ 1.14
VPS28-203ENST00000524521 CACNA1HO95180 2353 aa22.17■■□□□ 1.14
VPS28-203ENST00000524521 F5P12259 2224 aa22.16■■□□□ 1.14
VPS28-203ENST00000524521 WDFY4Q6ZS81 3184 aa22.16■■□□□ 1.14
VPS28-203ENST00000524521 ANAPC1Q9H1A4 1944 aa22.16■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms