RNA–Protein interactions for RNA: ENST00000524481.5

PTPRK-216, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 3,157 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-216ENST00000524481 CAVIN3Q969G5 261 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 VCPIP1Q96JH7 1222 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 SNX27Q96L92 541 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 VPS37BQ9H9H4 285 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 LRRC4Q9HBW1 653 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 TMPRSS4Q9NRS4 437 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 PRG3Q9Y2Y8 225 aaPredicted RBP12.34□□□□□ -0.43
PTPRK-216ENST00000524481 TRIP11Q15643 1979 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 F8W810 466 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 FSCN2O14926 492 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 CREB3O43889 395 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 DUSP11O75319 330 aaKnown RBP12.34□□□□□ -0.43
PTPRK-216ENST00000524481 HSPA6P17066 643 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 BRCC3P46736 316 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 CRYBB1P53674 252 aaPredicted RBP12.34□□□□□ -0.43
PTPRK-216ENST00000524481 HADHBP55084 474 aaKnown RBP12.34□□□□□ -0.43
PTPRK-216ENST00000524481 FAM187BQ17R55 369 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 MDH1BQ5I0G3 518 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 RCOR2Q8IZ40 523 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 LINC01465Q8N7H1 131 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 ANKRD42Q8N9B4 389 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 PIK3R5Q8WYR1 880 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 SLITRK1Q96PX8 696 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 KCNK16Q96T55 309 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 CEP41Q9BYV8 373 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 TRPV6Q9H1D0 765 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 MIOSQ9NXC5 875 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 PADI3Q9ULW8 664 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 SCN1AP35498 2009 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 COL1A2P08123 1366 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 FAM187AA6NFU0 413 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 SIGLEC16A6NMB1 481 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 RGS16O15492 202 aaPredicted RBP12.34□□□□□ -0.43
PTPRK-216ENST00000524481 LSM8O95777 96 aaKnown RBP12.34□□□□□ -0.43
PTPRK-216ENST00000524481 NR1D1P20393 614 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 ATICP31939 592 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 HNRNPH2P55795 449 aaKnown RBP12.34□□□□□ -0.43
PTPRK-216ENST00000524481 INHBEP58166 350 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 LILRA4P59901 499 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 POU5F1Q01860 360 aaKnown RBP12.34□□□□□ -0.43
PTPRK-216ENST00000524481 PPP2R5EQ16537 467 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 DEFB115Q30KQ5 88 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 TFDP3Q5H9I0 405 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 SPATA18Q8TC71 538 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 RBM41Q96IZ5 413 aaKnown RBP12.34□□□□□ -0.43
PTPRK-216ENST00000524481 NFKBIZQ9BYH8 718 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 BCO2Q9BYV7 579 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 TSPYL2Q9H2G4 693 aaPredicted RBP12.34□□□□□ -0.43
PTPRK-216ENST00000524481 FAM105AQ9NUU6 356 aa12.34□□□□□ -0.43
PTPRK-216ENST00000524481 LOC102724159A0A0B4J2E5 919 aa12.33□□□□□ -0.44
PTPRK-216ENST00000524481 GOLGA8KD6RF30 607 aa12.33□□□□□ -0.44
PTPRK-216ENST00000524481 MTA2O94776 668 aa12.33□□□□□ -0.44
PTPRK-216ENST00000524481 THP07101 528 aa12.33□□□□□ -0.44
PTPRK-216ENST00000524481 SLC8A3P57103 927 aa12.33□□□□□ -0.44
PTPRK-216ENST00000524481 ZNF844Q08AG5 666 aa12.33□□□□□ -0.44
PTPRK-216ENST00000524481 LRRC14Q15048 493 aa12.33□□□□□ -0.44
PTPRK-216ENST00000524481 PWP2Q15269 919 aaKnown RBP12.33□□□□□ -0.44
PTPRK-216ENST00000524481 EXD1Q8NHP7 514 aa12.33□□□□□ -0.44
PTPRK-216ENST00000524481 EDEM1Q92611 657 aa12.33□□□□□ -0.44
PTPRK-216ENST00000524481 RNF34Q969K3 372 aa12.33□□□□□ -0.44
PTPRK-216ENST00000524481 SAYSD1Q9NPB0 183 aa12.33□□□□□ -0.44
PTPRK-216ENST00000524481 ASNSD1Q9NWL6 643 aa12.33□□□□□ -0.44
PTPRK-216ENST00000524481 PIH1D1Q9NWS0 290 aaKnown RBP12.33□□□□□ -0.44
PTPRK-216ENST00000524481 DDX43Q9NXZ2 648 aaKnown RBP12.33□□□□□ -0.44
PTPRK-216ENST00000524481 SEPT10Q9P0V9 454 aa12.33□□□□□ -0.44
PTPRK-216ENST00000524481 CTNNAL1Q9UBT7 734 aa12.33□□□□□ -0.44
PTPRK-216ENST00000524481 RBP3P10745 1247 aa12.33□□□□□ -0.44
PTPRK-216ENST00000524481 GPD1P21695 349 aa12.33□□□□□ -0.44
PTPRK-216ENST00000524481 IFI35P80217 286 aaPredicted RBP12.33□□□□□ -0.44
PTPRK-216ENST00000524481 MRPS6P82932 125 aaKnown RBP12.33□□□□□ -0.44
PTPRK-216ENST00000524481 RNASELQ05823 741 aaKnown RBP12.33□□□□□ -0.44
PTPRK-216ENST00000524481 ADIGQ0VDE8 80 aa12.33□□□□□ -0.44
PTPRK-216ENST00000524481 ARFGAP1Q8N6T3 406 aa12.33□□□□□ -0.44
PTPRK-216ENST00000524481 DYDC1Q8WWB3 177 aa12.33□□□□□ -0.44
PTPRK-216ENST00000524481 CAPNS2Q96L46 248 aa12.33□□□□□ -0.44
PTPRK-216ENST00000524481 GRHL1Q9NZI5 618 aa12.33□□□□□ -0.44
PTPRK-216ENST00000524481 FEZ2Q9UHY8 353 aaPredicted RBP12.33□□□□□ -0.44
PTPRK-216ENST00000524481 NME7Q9Y5B8 376 aa12.33□□□□□ -0.44
PTPRK-216ENST00000524481 E7EVH7 732 aa12.32□□□□□ -0.44
PTPRK-216ENST00000524481 XPOTO43592 962 aaKnown RBP12.32□□□□□ -0.44
PTPRK-216ENST00000524481 BEST1O76090 585 aa12.32□□□□□ -0.44
PTPRK-216ENST00000524481 CHRNA1P02708 482 aa12.32□□□□□ -0.44
PTPRK-216ENST00000524481 PAEPP09466 180 aa12.32□□□□□ -0.44
PTPRK-216ENST00000524481 ACTN2P35609 894 aa12.32□□□□□ -0.44
PTPRK-216ENST00000524481 CCT5P48643 541 aa12.32□□□□□ -0.44
PTPRK-216ENST00000524481 SIX1Q15475 284 aaPredicted RBP12.32□□□□□ -0.44
PTPRK-216ENST00000524481 ZDHHC24Q6UX98 284 aa12.32□□□□□ -0.44
PTPRK-216ENST00000524481 SMG8Q8ND04 991 aaKnown RBP12.32□□□□□ -0.44
PTPRK-216ENST00000524481 EXOC4Q96A65 974 aa12.32□□□□□ -0.44
PTPRK-216ENST00000524481 ZNF518BQ9C0D4 1074 aa12.32□□□□□ -0.44
PTPRK-216ENST00000524481 CYP3A43Q9HB55 503 aa12.32□□□□□ -0.44
PTPRK-216ENST00000524481 TTLL3Q9Y4R7 772 aa12.32□□□□□ -0.44
PTPRK-216ENST00000524481 PSTPIP1O43586 416 aa12.32□□□□□ -0.44
PTPRK-216ENST00000524481 UPP2O95045 317 aa12.32□□□□□ -0.44
PTPRK-216ENST00000524481 HMGCRP04035 888 aa12.32□□□□□ -0.44
PTPRK-216ENST00000524481 EIF3EP60228 445 aaKnown RBP12.32□□□□□ -0.44
PTPRK-216ENST00000524481 GAD2Q05329 585 aa12.32□□□□□ -0.44
PTPRK-216ENST00000524481 POU5F1BQ06416 359 aa12.32□□□□□ -0.44
PTPRK-216ENST00000524481 BBS9Q3SYG4 887 aa12.32□□□□□ -0.44
PTPRK-216ENST00000524481 NME8Q8N427 588 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms