RNA–Protein interactions for RNA: ENST00000515620.5

CLDND1-231, Transcript of claudin domain containing 1, human

TSL 3

Gene CLDND1, Length 663 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLDND1-231	ENST00000515620	HDC	P19113	662 aa		11.28	□□□□□ -0.6
CLDND1-231	ENST00000515620	KIR2DL1	P43626	348 aa	Predicted RBP	11.28	□□□□□ -0.6
CLDND1-231	ENST00000515620	ZXDB	P98169	803 aa		11.28	□□□□□ -0.6
CLDND1-231	ENST00000515620	NFE2	Q16621	373 aa	Predicted RBP	11.28	□□□□□ -0.6
CLDND1-231	ENST00000515620	CCDC142	Q17RM4	750 aa		11.28	□□□□□ -0.6
CLDND1-231	ENST00000515620	PLEKHG6	Q3KR16	790 aa		11.28	□□□□□ -0.6
CLDND1-231	ENST00000515620	CENPQ	Q7L2Z9	268 aa	Predicted RBP	11.28	□□□□□ -0.6
CLDND1-231	ENST00000515620	SLCO6A1	Q86UG4	719 aa		11.28	□□□□□ -0.6
CLDND1-231	ENST00000515620	MARCH9	Q86YJ5	346 aa		11.28	□□□□□ -0.6
CLDND1-231	ENST00000515620	CD302	Q8IX05	232 aa		11.28	□□□□□ -0.6
CLDND1-231	ENST00000515620	IGSF22	Q8N9C0	903 aa		11.28	□□□□□ -0.6
CLDND1-231	ENST00000515620	TRIML1	Q8N9V2	468 aa		11.28	□□□□□ -0.6
CLDND1-231	ENST00000515620	LRRC15	Q8TF66	581 aa		11.28	□□□□□ -0.6
CLDND1-231	ENST00000515620	LEO1	Q8WVC0	666 aa	Predicted RBP	11.28	□□□□□ -0.6
CLDND1-231	ENST00000515620	GTF3C6	Q969F1	213 aa		11.28	□□□□□ -0.6
CLDND1-231	ENST00000515620	MYRFL	Q96LU7	910 aa		11.28	□□□□□ -0.6
CLDND1-231	ENST00000515620	UBL7	Q96S82	380 aa	Predicted RBP	11.28	□□□□□ -0.6
CLDND1-231	ENST00000515620	ARHGEF4	Q9NR80	690 aa		11.28	□□□□□ -0.6
CLDND1-231	ENST00000515620	DKK4	Q9UBT3	224 aa		11.28	□□□□□ -0.6
CLDND1-231	ENST00000515620	CPSF3	Q9UKF6	684 aa	Known RBP	11.28	□□□□□ -0.6
CLDND1-231	ENST00000515620	PLXNB3	Q9ULL4	1909 aa		11.28	□□□□□ -0.6
CLDND1-231	ENST00000515620	BPTF	Q12830	3046 aa		11.28	□□□□□ -0.6
CLDND1-231	ENST00000515620	HELZ	P42694	1942 aa	Known RBP	11.27	□□□□□ -0.6
CLDND1-231	ENST00000515620	SCN1A	P35498	2009 aa		11.27	□□□□□ -0.61
CLDND1-231	ENST00000515620	IGHV1OR15-9	A0A0B4J2B8	117 aa		11.27	□□□□□ -0.61
CLDND1-231	ENST00000515620	ACAT1	P24752	427 aa	Known RBP	11.27	□□□□□ -0.61
CLDND1-231	ENST00000515620	CDC25A	P30304	524 aa		11.27	□□□□□ -0.61
CLDND1-231	ENST00000515620	ATP2C1	P98194	919 aa	Predicted RBP	11.27	□□□□□ -0.61
CLDND1-231	ENST00000515620	CYP4F3	Q08477	520 aa		11.27	□□□□□ -0.61
CLDND1-231	ENST00000515620	GRIK2	Q13002	908 aa		11.27	□□□□□ -0.61
CLDND1-231	ENST00000515620	DHCR24	Q15392	516 aa		11.27	□□□□□ -0.61
CLDND1-231	ENST00000515620	ZRSR1	Q15695	479 aa	Known RBP	11.27	□□□□□ -0.61
CLDND1-231	ENST00000515620	SV2C	Q496J9	727 aa		11.27	□□□□□ -0.61
CLDND1-231	ENST00000515620	KRT79	Q5XKE5	535 aa		11.27	□□□□□ -0.61
CLDND1-231	ENST00000515620	SCN4B	Q8IWT1	228 aa		11.27	□□□□□ -0.61
CLDND1-231	ENST00000515620	RGL4	Q8IZJ4	473 aa		11.27	□□□□□ -0.61
CLDND1-231	ENST00000515620	PNMA5	Q96PV4	448 aa		11.27	□□□□□ -0.61
CLDND1-231	ENST00000515620	RAB34	Q9BZG1	259 aa		11.27	□□□□□ -0.61
CLDND1-231	ENST00000515620	CCSER1	Q9C0I3	900 aa		11.27	□□□□□ -0.61
CLDND1-231	ENST00000515620	ABCB6	Q9NP58	842 aa		11.27	□□□□□ -0.61
CLDND1-231	ENST00000515620	DPP3	Q9NY33	737 aa		11.27	□□□□□ -0.61
CLDND1-231	ENST00000515620	KCNG1	Q9UIX4	513 aa		11.27	□□□□□ -0.61
CLDND1-231	ENST00000515620	CYP8B1	Q9UNU6	501 aa		11.27	□□□□□ -0.61
CLDND1-231	ENST00000515620	DERA	Q9Y315	318 aa		11.27	□□□□□ -0.61
CLDND1-231	ENST00000515620	STK24	Q9Y6E0	443 aa		11.27	□□□□□ -0.61
CLDND1-231	ENST00000515620		A0A087WV48	116 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620		A0A0B4J269	797 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	NPHP3-ACAD11	A0A0J9YXS1	232 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	CYSRT1	A8MQ03	144 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	KPNA7	A9QM74	516 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620		H0YCG3	227 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	EPB41L2	O43491	1005 aa	Known RBP	11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	CBFA2T3	O75081	653 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	ADH1C	P00326	375 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	ADH5	P11766	374 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	PLA2G2A	P14555	144 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	EIF2D	P41214	584 aa	Known RBP	11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	GRIA2	P42262	883 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	ACOT2	P49753	483 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	PDE6C	P51160	858 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	NCKAP1L	P55160	1127 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	PDIA5	Q14554	519 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	ANKRD1	Q15327	319 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	ME3	Q16798	604 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	INTS6L	Q5JSJ4	861 aa	Known RBP	11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	GLRX5	Q86SX6	157 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	ADGRG2	Q8IZP9	1017 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	PDCL2	Q8N4E4	241 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	ZNF513	Q8N8E2	541 aa	Predicted RBP	11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	C4orf32	Q8N8J7	132 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	SETD7	Q8WTS6	366 aa	Known RBP	11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	SLC39A7	Q92504	469 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	ERLEC1	Q96DZ1	483 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	ZNF560	Q96MR9	790 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	DCBLD2	Q96PD2	775 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	SMPD4	Q9NXE4	827 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	DDX43	Q9NXZ2	648 aa	Known RBP	11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	PCOLCE2	Q9UKZ9	415 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	C2CD2	Q9Y426	696 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	TCHH	Q07283	1943 aa		11.26	□□□□□ -0.61
CLDND1-231	ENST00000515620	ZNF462	Q96JM2	2506 aa		11.25	□□□□□ -0.61
CLDND1-231	ENST00000515620		K7ENM7	598 aa		11.25	□□□□□ -0.61
CLDND1-231	ENST00000515620	SLC9A3R1	O14745	358 aa	Predicted RBP	11.25	□□□□□ -0.61
CLDND1-231	ENST00000515620	PIGR	P01833	764 aa		11.25	□□□□□ -0.61
CLDND1-231	ENST00000515620	HOXB2	P14652	356 aa		11.25	□□□□□ -0.61
CLDND1-231	ENST00000515620	WAS	P42768	502 aa		11.25	□□□□□ -0.61
CLDND1-231	ENST00000515620	TNFRSF4	P43489	277 aa		11.25	□□□□□ -0.61
CLDND1-231	ENST00000515620	ABCG1	P45844	678 aa		11.25	□□□□□ -0.61
CLDND1-231	ENST00000515620	SLC39A4	Q6P5W5	647 aa		11.25	□□□□□ -0.61
CLDND1-231	ENST00000515620	RHBDF2	Q6PJF5	856 aa		11.25	□□□□□ -0.61
CLDND1-231	ENST00000515620	TMPRSS7	Q7RTY8	843 aa		11.25	□□□□□ -0.61
CLDND1-231	ENST00000515620	TRMT11	Q7Z4G4	463 aa	Known RBP	11.25	□□□□□ -0.61
CLDND1-231	ENST00000515620	SPATA2L	Q8IUW3	424 aa	Predicted RBP	11.25	□□□□□ -0.61
CLDND1-231	ENST00000515620	PIP4K2C	Q8TBX8	421 aa		11.25	□□□□□ -0.61
CLDND1-231	ENST00000515620	PLIN2	Q99541	437 aa		11.25	□□□□□ -0.61
CLDND1-231	ENST00000515620	PKMYT1	Q99640	499 aa		11.25	□□□□□ -0.61
CLDND1-231	ENST00000515620	MMTAG2	Q9BU76	263 aa	Known RBP	11.25	□□□□□ -0.61
CLDND1-231	ENST00000515620	FAM124B	Q9H5Z6	455 aa	Predicted RBP	11.25	□□□□□ -0.61
CLDND1-231	ENST00000515620	ASB7	Q9H672	318 aa		11.25	□□□□□ -0.61
CLDND1-231	ENST00000515620	CD93	Q9NPY3	652 aa		11.25	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms