RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 TAF1CQ15572 869 aaPredicted RBP13.16□□□□□ -0.3
USP53-209ENST00000514665 PKN2Q16513 984 aaKnown RBP13.16□□□□□ -0.3
USP53-209ENST00000514665 NFIL3Q16649 462 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 DCAF4L1Q3SXM0 396 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 ACCSLQ4AC99 568 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 SZRD1Q7Z422 152 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 SNX19Q92543 992 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 OLFM3Q96PB7 478 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 KDM4CQ9H3R0 1056 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 TMEM51Q9NW97 253 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 SAE1Q9UBE0 346 aaPredicted RBP13.16□□□□□ -0.3
USP53-209ENST00000514665 FAM198AQ9UFP1 575 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 SKAP2O75563 359 aaPredicted RBP13.16□□□□□ -0.3
USP53-209ENST00000514665 SKOR1P84550 965 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 CNTN2Q02246 1040 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 PDCD2Q16342 344 aaPredicted RBP13.16□□□□□ -0.3
USP53-209ENST00000514665 NOTUMQ6P988 496 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 SLC26A11Q86WA9 606 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 RFWD2Q8NHY2 731 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 URGCPQ8TCY9 931 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 INPP4AQ96PE3 977 aaPredicted RBP13.16□□□□□ -0.3
USP53-209ENST00000514665 ZNF518BQ9C0D4 1074 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 SUFUQ9UMX1 484 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 GAKO14976 1311 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 ARHGAP10A1A4S6 786 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 ZNF263O14978 683 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 TRAPPC3O43617 180 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 PIAS1O75925 651 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 ETFBP38117 255 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 COPAP53621 1224 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 DAB2IPQ5VWQ8 1189 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 FZD1Q9UP38 647 aa13.16□□□□□ -0.3
USP53-209ENST00000514665 CES2O00748 559 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 GAS2O43903 313 aaKnown RBP13.15□□□□□ -0.3
USP53-209ENST00000514665 B3GAT3O94766 335 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 STMN1P16949 149 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 PCSK1P29120 753 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 HNRNPH3P31942 346 aaKnown RBP13.15□□□□□ -0.3
USP53-209ENST00000514665 LAMTOR4Q0VGL1 99 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 SNAPC2Q13487 334 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 SV2CQ496J9 727 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 GPRC5AQ8NFJ5 357 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 TCP10LQ8TDR4 215 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 PURBQ96QR8 312 aaKnown RBP13.15□□□□□ -0.3
USP53-209ENST00000514665 WDR18Q9BV38 432 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 VPS33BQ9H267 617 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 PCDH9Q9HC56 1237 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 SNX5Q9Y5X3 404 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 DNALI1O14645 258 aaPredicted RBP13.15□□□□□ -0.3
USP53-209ENST00000514665 ZCCHC18P0CG32 403 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 ATP6V1B1P15313 513 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 VHLP40337 213 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 NUDT2P50583 147 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 ARHGDIAP52565 204 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 RPL10AP62906 217 aaKnown RBP13.15□□□□□ -0.3
USP53-209ENST00000514665 PDAP1Q13442 181 aaKnown RBP13.15□□□□□ -0.3
USP53-209ENST00000514665 LY6KQ17RY6 165 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 ATP13A4Q4VNC1 1196 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 GNASQ5JWF2 1037 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 IRF2BP2Q7Z5L9 587 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 ANKRD13AQ8IZ07 590 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 PRELID2Q8N945 189 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 PGM2Q96G03 612 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 TMEM176AQ96HP8 235 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 TMEM237Q96Q45 408 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 GLIS2Q9BZE0 524 aaPredicted RBP13.15□□□□□ -0.3
USP53-209ENST00000514665 EML4Q9HC35 981 aaKnown RBP13.15□□□□□ -0.3
USP53-209ENST00000514665 UBP1Q9NZI7 540 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 PRG3Q9Y2Y8 225 aaPredicted RBP13.15□□□□□ -0.3
USP53-209ENST00000514665 WNT10BO00744 389 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 PSMD10O75832 226 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 RPS12P25398 132 aaKnown RBP13.15□□□□□ -0.3
USP53-209ENST00000514665 SHROOM1Q2M3G4 852 aaPredicted RBP13.15□□□□□ -0.3
USP53-209ENST00000514665 WDR49Q8IV35 697 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 FAM136AQ96C01 138 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 TRIM62Q9BVG3 475 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 MAP3K20Q9NYL2 800 aaKnown RBP13.15□□□□□ -0.3
USP53-209ENST00000514665 STX18Q9P2W9 335 aaKnown RBP13.15□□□□□ -0.3
USP53-209ENST00000514665 SLC24A2Q9UI40 661 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 UBQLN1Q9UMX0 589 aaKnown RBP13.15□□□□□ -0.3
USP53-209ENST00000514665 AP4E1Q9UPM8 1137 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 DNAJC16Q9Y2G8 782 aa13.15□□□□□ -0.3
USP53-209ENST00000514665 CCL15-CCL14A0A0B4J2E2 113 aa13.15□□□□□ -0.31
USP53-209ENST00000514665 SDR42E2A6NKP2 422 aa13.15□□□□□ -0.31
USP53-209ENST00000514665 VWA5AO00534 786 aa13.15□□□□□ -0.31
USP53-209ENST00000514665 AP1G2O75843 785 aa13.15□□□□□ -0.31
USP53-209ENST00000514665 RBBP7Q16576 425 aa13.15□□□□□ -0.31
USP53-209ENST00000514665 CCL15Q16663 113 aa13.15□□□□□ -0.31
USP53-209ENST00000514665 SLC30A9Q6PML9 568 aa13.15□□□□□ -0.31
USP53-209ENST00000514665 PRUNE1Q86TP1 453 aa13.15□□□□□ -0.31
USP53-209ENST00000514665 KCTD10Q9H3F6 313 aa13.15□□□□□ -0.31
USP53-209ENST00000514665 SHOC2Q9UQ13 582 aa13.15□□□□□ -0.31
USP53-209ENST00000514665 NDUFS3O75489 264 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 LSM8O95777 96 aaKnown RBP13.14□□□□□ -0.31
USP53-209ENST00000514665 HOXA10P31260 410 aaPredicted RBP13.14□□□□□ -0.31
USP53-209ENST00000514665 AVPR1AP37288 418 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 CDC42EP1Q00587 391 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 RASA2Q15283 850 aa13.14□□□□□ -0.31
USP53-209ENST00000514665 RNF219Q5W0B1 726 aaPredicted RBP13.14□□□□□ -0.31
USP53-209ENST00000514665 NAPEPLDQ6IQ20 393 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms