RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 KBTBD2Q8IY47 623 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 PPM1NQ8N819 430 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 MFSD14AQ96MC6 490 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 ZWILCHQ9H900 591 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 SAR1AQ9NR31 198 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 SLC9A2Q9UBY0 812 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 PPP1R1BQ9UD71 204 aaPredicted RBP10.08□□□□□ -0.8
VCAN-210ENST00000513960 PACSIN3Q9UKS6 424 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 ANKRD33BA6NCL7 494 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 ZNF862O60290 1169 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 HNRNPCL1O60812 293 aaKnown RBP10.08□□□□□ -0.8
VCAN-210ENST00000513960 DNAJC6O75061 913 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 EGFRP00533 1210 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 SETSIPP0DME0 302 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 GARTP22102 1010 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 GEMIN4P57678 1058 aaKnown RBP10.08□□□□□ -0.8
VCAN-210ENST00000513960 PRKCEQ02156 737 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 TBC1D25Q3MII6 688 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 LIN52Q52LA3 116 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 PLEKHG4Q58EX7 1191 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 NBPF12Q5TAG4 269 aaPredicted RBP10.08□□□□□ -0.8
VCAN-210ENST00000513960 ZNF280CQ8ND82 737 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 OXNAD1Q96HP4 312 aaPredicted RBP10.08□□□□□ -0.8
VCAN-210ENST00000513960 POLR3FQ9H1D9 316 aaPredicted RBP10.08□□□□□ -0.8
VCAN-210ENST00000513960 LGALS13Q9UHV8 139 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 SH3BP1Q9Y3L3 701 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 LOC100653049A0A140TA62 436 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 KRT34O76011 436 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 ABCD1P33897 745 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 HMGCS2P54868 508 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 BPIFB4P59827 614 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 CDK16Q00536 496 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 CYP1B1Q16678 543 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 ZNF394Q53GI3 561 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 DALRD3Q5D0E6 543 aaKnown RBP10.08□□□□□ -0.8
VCAN-210ENST00000513960 ZFAND2BQ8WV99 257 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 WNK4Q96J92 1243 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 PHF12Q96QT6 1004 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 WRNIP1Q96S55 665 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 ECSITQ9BQ95 431 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 EBF3Q9H4W6 596 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 IFT122Q9HBG6 1241 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 CYP26B1Q9NR63 512 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 STX18Q9P2W9 335 aaKnown RBP10.08□□□□□ -0.8
VCAN-210ENST00000513960 ZNF212Q9UDV6 495 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 HACL1Q9UJ83 578 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 MTO1Q9Y2Z2 717 aaKnown RBP10.08□□□□□ -0.8
VCAN-210ENST00000513960 RBBP6Q7Z6E9 1792 aaKnown RBP10.08□□□□□ -0.8
VCAN-210ENST00000513960 COL4A5P29400 1685 aa10.08□□□□□ -0.8
VCAN-210ENST00000513960 TAS2R40P59535 323 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 OCRLQ01968 901 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 TNFAIP8L3Q5GJ75 292 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 DPH6Q7L8W6 267 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 MICALL2Q8IY33 904 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 ZNF513Q8N8E2 541 aaPredicted RBP10.07□□□□□ -0.8
VCAN-210ENST00000513960 FBXL18Q96ME1 805 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 SENP7Q9BQF6 1050 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 MECRQ9BV79 373 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 PCDHB4Q9Y5E5 795 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 OR6B1O95007 311 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 RPS12P25398 132 aaKnown RBP10.07□□□□□ -0.8
VCAN-210ENST00000513960 ACTR2P61160 394 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 GCNT1Q02742 428 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 LMNB2Q03252 620 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 PTK7Q13308 1070 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 SMTNL2Q2TAL5 461 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 WDR72Q3MJ13 1102 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 SH2D4BQ5SQS7 431 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 ACBD5Q5T8D3 534 aaPredicted RBP10.07□□□□□ -0.8
VCAN-210ENST00000513960 SLC39A4Q6P5W5 647 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 MARK2Q7KZI7 788 aaKnown RBP10.07□□□□□ -0.8
VCAN-210ENST00000513960 SDCCAG8Q86SQ7 713 aaPredicted RBP10.07□□□□□ -0.8
VCAN-210ENST00000513960 MAP7D3Q8IWC1 876 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 ZCCHC9Q8N567 271 aaKnown RBP10.07□□□□□ -0.8
VCAN-210ENST00000513960 ATP11CQ8NB49 1132 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 FBXO36Q8NEA4 188 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 GSTCDQ8NEC7 633 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 TRIM11Q96F44 468 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 APOL6Q9BWW8 343 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 FAM192AQ9GZU8 254 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 ACTL7BQ9Y614 415 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 ZC3H11AO75152 810 aaKnown RBP eCLIP10.07□□□□□ -0.8
VCAN-210ENST00000513960 NCF2P19878 526 aaPredicted RBP10.07□□□□□ -0.8
VCAN-210ENST00000513960 HIRAP54198 1017 aaPredicted RBP10.07□□□□□ -0.8
VCAN-210ENST00000513960 HIC1Q14526 733 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 CLEC16AQ2KHT3 1053 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 XKR3Q5GH77 459 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 RHBDF2Q6PJF5 856 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 SATL1Q86VE3 508 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 DEPTORQ8TB45 409 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 PTPRN2Q92932 1015 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 SPATA16Q9BXB7 569 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 FAF1Q9UNN5 650 aaPredicted RBP10.07□□□□□ -0.8
VCAN-210ENST00000513960 PCDHB2Q9Y5E7 798 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 PSME4Q14997 1843 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 LRRIQ4A6NIV6 560 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 DNALI1O14645 258 aaPredicted RBP10.07□□□□□ -0.8
VCAN-210ENST00000513960 EXTL3O43909 919 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 KCNA2P16389 499 aa10.07□□□□□ -0.8
VCAN-210ENST00000513960 AQP5P55064 265 aa10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms