RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 TCF4P15884 667 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 PLIN5Q00G26 463 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 PRKAA1Q13131 559 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 VPS72Q15906 364 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 TYW3Q6IPR3 259 aaKnown RBP11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 AAGABQ6PD74 315 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 EPHX4Q8IUS5 362 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 DCAF4Q8WV16 495 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 L3MBTL3Q96JM7 780 aaPredicted RBP11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 MED15Q96RN5 788 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 CROTQ9UKG9 612 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 ASAP1Q9ULH1 1129 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 MAPRE3Q9UPY8 281 aa11.62□□□□□ -0.55
LIMCH1-217ENST00000512946 A0A087WWV3 80 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 CES2O00748 559 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 ANXA9O76027 345 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 ADAMTS2O95450 1211 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 GUCA1AP43080 201 aaPredicted RBP11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 ATP2C1P98194 919 aaPredicted RBP11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 DUOXA2Q1HG44 320 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 MTERF2Q49AM1 385 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 ATP6AP1LQ52LC2 224 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 DGKKQ5KSL6 1271 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 PADI6Q6TGC4 694 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 CDK20Q8IZL9 346 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 C8orf59Q8N0T1 100 aaPredicted RBP11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 GPD1LQ8N335 351 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 OR2W6PQ8NHA6 318 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 ACTRT2Q8TDY3 377 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 USP13Q92995 863 aaPredicted RBP11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 KLHL32Q96NJ5 620 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 ASB2Q96Q27 587 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 ERGIC2Q96RQ1 377 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 TMEM120AQ9BXJ8 343 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 ARMC7Q9H6L4 198 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 KLHL28Q9NXS3 571 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 PHF11Q9UIL8 331 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 ARHGEF11O15085 1522 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 TOP2BQ02880 1626 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 H3BNX3 289 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 ABATP80404 500 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 CHRNA2Q15822 529 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 RFX4Q33E94 735 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 FIGNQ5HY92 759 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 BNIPLQ7Z465 357 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 NET1Q7Z628 596 aaPredicted RBP11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 SYTL1Q8IYJ3 562 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 LARGE2Q8N3Y3 721 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 TSPAN14Q8NG11 270 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 OR6Y1Q8NGX8 325 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 POLR1BQ9H9Y6 1135 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 A1CFQ9NQ94 594 aaKnown RBP11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 SQORQ9Y6N5 450 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 PDS5AQ29RF7 1337 aaKnown RBP11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 GCP02774 474 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 GRIK1P39086 918 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 NAA20P61599 178 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 ARHGEF6Q15052 776 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 SLC25A24Q6NUK1 477 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 MTDHQ86UE4 582 aaKnown RBP11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 SLC26A11Q86WA9 606 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 SLC13A5Q86YT5 568 aaPredicted RBP11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 UNC45BQ8IWX7 931 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 MINDY2Q8NBR6 621 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 NOA1Q8NC60 698 aaKnown RBP11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 STARD8Q92502 1023 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 CDH9Q9ULB4 789 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 URB2Q14146 1524 aaKnown RBP11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 ZNF185O15231 689 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 PSMG1O95456 288 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 ZNF12P17014 697 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 TFE3P19532 575 aaPredicted RBP11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 ACADSBP45954 432 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 ERFP50548 548 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 EFNA5P52803 228 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 SLC45A4Q5BKX6 768 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 SCARA3Q6AZY7 606 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 UBE2Q1Q7Z7E8 422 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 NIM1KQ8IY84 436 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 GIPC3Q8TF64 312 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 DDX17Q92841 729 aaKnown RBP11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 FAM111AQ96PZ2 611 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 EHD3Q9NZN3 535 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 ZSWIM5Q9P217 1185 aa11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 PCF11O94913 1555 aaKnown RBP11.61□□□□□ -0.55
LIMCH1-217ENST00000512946 CHP2O43745 196 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 RHOBTB3O94955 611 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 P4HBP07237 508 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 MSL3P1P0C860 447 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 CYP2D6P10635 497 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 RALAP11233 206 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 CDK7P50613 346 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 TCP10Q12799 353 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 KIZQ2M2Z5 673 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 ZC2HC1CQ53FD0 456 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 BOLA3Q53S33 107 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 INO80DQ53TQ3 878 aaPredicted RBP11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 PDPK2PQ6A1A2 396 aa11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 EIF3MQ7L2H7 374 aaKnown RBP11.6□□□□□ -0.55
LIMCH1-217ENST00000512946 ZDHHC13Q8IUH4 622 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms