RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 BRAFP15056 766 aa12.56□□□□□ -0.4
NUP54-202ENST00000502850 TCF4P15884 667 aa12.56□□□□□ -0.4
NUP54-202ENST00000502850 PECAM1P16284 738 aaPredicted RBP12.56□□□□□ -0.4
NUP54-202ENST00000502850 GPD2P43304 727 aa12.56□□□□□ -0.4
NUP54-202ENST00000502850 YARSP54577 528 aaKnown RBP12.56□□□□□ -0.4
NUP54-202ENST00000502850 CDH8P55286 799 aa12.56□□□□□ -0.4
NUP54-202ENST00000502850 OTUD4Q01804 1114 aaKnown RBP12.56□□□□□ -0.4
NUP54-202ENST00000502850 ACTN3Q08043 901 aaPredicted RBP12.56□□□□□ -0.4
NUP54-202ENST00000502850 HIF1AQ16665 826 aa12.56□□□□□ -0.4
NUP54-202ENST00000502850 QPCTQ16769 361 aa12.56□□□□□ -0.4
NUP54-202ENST00000502850 LACTB2Q53H82 288 aaPredicted RBP12.56□□□□□ -0.4
NUP54-202ENST00000502850 PIGWQ7Z7B1 504 aa12.56□□□□□ -0.4
NUP54-202ENST00000502850 ZDHHC17Q8IUH5 632 aa12.56□□□□□ -0.4
NUP54-202ENST00000502850 MAP7D3Q8IWC1 876 aa12.56□□□□□ -0.4
NUP54-202ENST00000502850 CCDC13Q8IYE1 715 aa12.56□□□□□ -0.4
NUP54-202ENST00000502850 LRRC52Q8N7C0 313 aa12.56□□□□□ -0.4
NUP54-202ENST00000502850 JOSD2Q8TAC2 188 aa12.56□□□□□ -0.4
NUP54-202ENST00000502850 ACTL9Q8TC94 416 aa12.56□□□□□ -0.4
NUP54-202ENST00000502850 KIF12Q96FN5 646 aa12.56□□□□□ -0.4
NUP54-202ENST00000502850 CPB2Q96IY4 423 aa12.56□□□□□ -0.4
NUP54-202ENST00000502850 ZNF668Q96K58 619 aaPredicted RBP12.56□□□□□ -0.4
NUP54-202ENST00000502850 C9orf72Q96LT7 481 aa12.56□□□□□ -0.4
NUP54-202ENST00000502850 FAM118BQ9BPY3 351 aa12.56□□□□□ -0.4
NUP54-202ENST00000502850 MAK16Q9BXY0 300 aaKnown RBP12.56□□□□□ -0.4
NUP54-202ENST00000502850 GCOM2Q9BZD3 368 aaPredicted RBP12.56□□□□□ -0.4
NUP54-202ENST00000502850 ABHD16BQ9H3Z7 469 aa12.56□□□□□ -0.4
NUP54-202ENST00000502850 USP18Q9UMW8 372 aa12.56□□□□□ -0.4
NUP54-202ENST00000502850 SMG5Q9UPR3 1016 aaKnown RBP12.56□□□□□ -0.4
NUP54-202ENST00000502850 ANKRD65E5RJM6 399 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 DPYSL4O14531 572 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 TRUB2O95900 331 aaKnown RBP12.55□□□□□ -0.4
NUP54-202ENST00000502850 VTNP04004 478 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 MMP3P08254 477 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 GSTA1P08263 222 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 ATP2A2P16615 1042 aaKnown RBP12.55□□□□□ -0.4
NUP54-202ENST00000502850 STX2P32856 288 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 GJA5P36382 358 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 NDST1P52848 882 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 UBAP2Q5T6F2 1119 aaKnown RBP12.55□□□□□ -0.4
NUP54-202ENST00000502850 SCARA3Q6AZY7 606 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 IQSEC1Q6DN90 963 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 DPP9Q86TI2 863 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 RFX6Q8HWS3 928 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 ATP11CQ8NB49 1132 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 BEST2Q8NFU1 509 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 OR6J1Q8NGC5 347 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 PRCCQ92733 491 aaPredicted RBP12.55□□□□□ -0.4
NUP54-202ENST00000502850 USP6NLQ92738 828 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 GRAMD1AQ96CP6 724 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 TBCBQ99426 244 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 PARK7Q99497 189 aaKnown RBP12.55□□□□□ -0.4
NUP54-202ENST00000502850 FRMD8Q9BZ67 464 aaPredicted RBP12.55□□□□□ -0.4
NUP54-202ENST00000502850 KATNBL1Q9H079 304 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 KCNK9Q9NPC2 374 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 DNAJC17Q9NVM6 304 aaKnown RBP12.55□□□□□ -0.4
NUP54-202ENST00000502850 EURLQ9NYK6 297 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 CYTH4Q9UIA0 394 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 FARP1Q9Y4F1 1045 aaPredicted RBP12.55□□□□□ -0.4
NUP54-202ENST00000502850 CAPN7Q9Y6W3 813 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 PDCD11Q14690 1871 aaKnown RBP12.55□□□□□ -0.4
NUP54-202ENST00000502850 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.55□□□□□ -0.4
NUP54-202ENST00000502850 CCL15-CCL14A0A0B4J2E2 113 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 CFAP69A5D8W1 941 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 ZNF487B1APH4 448 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 XPOTO43592 962 aaKnown RBP12.55□□□□□ -0.4
NUP54-202ENST00000502850 PRPSAP2O60256 369 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 ALDH1A1P00352 501 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 IFNB1P01574 187 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 MIPP30301 263 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 AXLP30530 894 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 STIP1P31948 543 aaKnown RBP12.55□□□□□ -0.4
NUP54-202ENST00000502850 ADCYAP1R1P41586 468 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 IL9RQ01113 521 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 GRB14Q14449 540 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 PDK2Q15119 407 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 CCL15Q16663 113 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 KLHL38Q2WGJ6 581 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 CCDC38Q502W7 563 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 TXNRD3NBQ6F5E7 133 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 SLC27A1Q6PCB7 646 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 VSTM1Q6UX27 236 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 CTU1Q7Z7A3 348 aaKnown RBP12.55□□□□□ -0.4
NUP54-202ENST00000502850 SESTD1Q86VW0 696 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 UNC93AQ86WB7 457 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 LRRC34Q8IZ02 419 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 CNPY4Q8N129 248 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 GBP7Q8N8V2 638 aaPredicted RBP12.55□□□□□ -0.4
NUP54-202ENST00000502850 ZNF296Q8WUU4 475 aaPredicted RBP12.55□□□□□ -0.4
NUP54-202ENST00000502850 TEKT4Q8WW24 435 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 CKAP2Q8WWK9 683 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 MAGEB18Q96M61 343 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 TWNKQ96RR1 684 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 TMEM121Q9BTD3 319 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 CFHR5Q9BXR6 569 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 HESX1Q9UBX0 185 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 TSPAN16Q9UKR8 245 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 NAALADL1Q9UQQ1 740 aa12.55□□□□□ -0.4
NUP54-202ENST00000502850 FAM47DPA6NHR8 397 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 C2CD4BA6NLJ0 364 aa12.54□□□□□ -0.4
NUP54-202ENST00000502850 CCT8L1PA6NM43 557 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms