RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 PNMA5Q96PV4 448 aa17.71■□□□□ 0.43
VIM-208ENST00000497849 PKMYT1Q99640 499 aa17.71■□□□□ 0.43
VIM-208ENST00000497849 RAB34Q9BZG1 259 aa17.71■□□□□ 0.43
VIM-208ENST00000497849 DPP3Q9NY33 737 aa17.71■□□□□ 0.43
VIM-208ENST00000497849 RAXQ9Y2V3 346 aa17.71■□□□□ 0.43
VIM-208ENST00000497849 C2CD2Q9Y426 696 aa17.71■□□□□ 0.43
VIM-208ENST00000497849 A0A0A0MRY4 1105 aa17.7■□□□□ 0.42
VIM-208ENST00000497849 TCRBV21S2A2A0A5A6 115 aa17.7■□□□□ 0.42
VIM-208ENST00000497849 H0YCG3 227 aa17.7■□□□□ 0.42
VIM-208ENST00000497849 AP5Z1O43299 807 aa17.7■□□□□ 0.42
VIM-208ENST00000497849 SLC12A3P55017 1021 aa17.7■□□□□ 0.42
VIM-208ENST00000497849 BYSLQ13895 437 aaKnown RBP17.7■□□□□ 0.42
VIM-208ENST00000497849 KCNB1Q14721 858 aa17.7■□□□□ 0.42
VIM-208ENST00000497849 HSF5Q4G112 596 aaPredicted RBP17.7■□□□□ 0.42
VIM-208ENST00000497849 EOGTQ5NDL2 527 aa17.7■□□□□ 0.42
VIM-208ENST00000497849 C12orf40Q86WS4 652 aa17.7■□□□□ 0.42
VIM-208ENST00000497849 ADGRG2Q8IZP9 1017 aa17.7■□□□□ 0.42
VIM-208ENST00000497849 ADAM32Q8TC27 787 aa17.7■□□□□ 0.42
VIM-208ENST00000497849 LRIG1Q96JA1 1093 aa17.7■□□□□ 0.42
VIM-208ENST00000497849 PNKPQ96T60 521 aa17.7■□□□□ 0.42
VIM-208ENST00000497849 ASB7Q9H672 318 aa17.7■□□□□ 0.42
VIM-208ENST00000497849 ABCB6Q9NP58 842 aa17.7■□□□□ 0.42
VIM-208ENST00000497849 LARSQ9P2J5 1176 aaKnown RBP17.7■□□□□ 0.42
VIM-208ENST00000497849 LEFTY2O00292 366 aa17.69■□□□□ 0.42
VIM-208ENST00000497849 KAT7O95251 611 aa17.69■□□□□ 0.42
VIM-208ENST00000497849 ACAT1P24752 427 aaKnown RBP17.69■□□□□ 0.42
VIM-208ENST00000497849 ACOT2P49753 483 aa17.69■□□□□ 0.42
VIM-208ENST00000497849 TOB1P50616 345 aaPredicted RBP17.69■□□□□ 0.42
VIM-208ENST00000497849 RPL6Q02878 288 aaKnown RBP17.69■□□□□ 0.42
VIM-208ENST00000497849 ZNF33AQ06730 810 aa17.69■□□□□ 0.42
VIM-208ENST00000497849 ZRSR1Q15695 479 aaKnown RBP17.69■□□□□ 0.42
VIM-208ENST00000497849 ARSHQ5FYA8 562 aa17.69■□□□□ 0.42
VIM-208ENST00000497849 FILIP1Q7Z7B0 1213 aa17.69■□□□□ 0.42
VIM-208ENST00000497849 PGBD3Q8N328 593 aa17.69■□□□□ 0.42
VIM-208ENST00000497849 C8orf76Q96K31 380 aa17.69■□□□□ 0.42
VIM-208ENST00000497849 ACBD6Q9BR61 282 aa17.69■□□□□ 0.42
VIM-208ENST00000497849 SCUBE2Q9NQ36 999 aa17.69■□□□□ 0.42
VIM-208ENST00000497849 CACNA2D2Q9NY47 1150 aa17.69■□□□□ 0.42
VIM-208ENST00000497849 PCDHB6Q9Y5E3 794 aa17.69■□□□□ 0.42
VIM-208ENST00000497849 MYMKA6NI61 221 aa17.68■□□□□ 0.42
VIM-208ENST00000497849 MAST4O15021 2626 aa17.68■□□□□ 0.42
VIM-208ENST00000497849 SLC14A1Q13336 389 aa17.68■□□□□ 0.42
VIM-208ENST00000497849 DHCR24Q15392 516 aa17.68■□□□□ 0.42
VIM-208ENST00000497849 SV2CQ496J9 727 aa17.68■□□□□ 0.42
VIM-208ENST00000497849 INTS6LQ5JSJ4 861 aaKnown RBP17.68■□□□□ 0.42
VIM-208ENST00000497849 HYIQ5T013 277 aa17.68■□□□□ 0.42
VIM-208ENST00000497849 SLC41A1Q8IVJ1 513 aa17.68■□□□□ 0.42
VIM-208ENST00000497849 PDCL2Q8N4E4 241 aa17.68■□□□□ 0.42
VIM-208ENST00000497849 FSIP1Q8NA03 581 aa17.68■□□□□ 0.42
VIM-208ENST00000497849 GLIS3Q8NEA6 775 aa17.68■□□□□ 0.42
VIM-208ENST00000497849 SPATA18Q8TC71 538 aa17.68■□□□□ 0.42
VIM-208ENST00000497849 PLIN2Q99541 437 aa17.68■□□□□ 0.42
VIM-208ENST00000497849 DDX43Q9NXZ2 648 aaKnown RBP17.68■□□□□ 0.42
VIM-208ENST00000497849 KCND2Q9NZV8 630 aa17.68■□□□□ 0.42
VIM-208ENST00000497849 GTF3C4Q9UKN8 822 aa17.68■□□□□ 0.42
VIM-208ENST00000497849 L1RE1Q9UN81 338 aa17.68■□□□□ 0.42
VIM-208ENST00000497849 EIF4E1BA6NMX2 242 aaKnown RBP17.67■□□□□ 0.42
VIM-208ENST00000497849 ANKRD63C9JTQ0 380 aa17.67■□□□□ 0.42
VIM-208ENST00000497849 KALRNO60229 2985 aa17.67■□□□□ 0.42
VIM-208ENST00000497849 APODP05090 189 aa17.67■□□□□ 0.42
VIM-208ENST00000497849 PLA2G4BP0C869 781 aa17.67■□□□□ 0.42
VIM-208ENST00000497849 EIF2DP41214 584 aaKnown RBP17.67■□□□□ 0.42
VIM-208ENST00000497849 ATP2C1P98194 919 aaPredicted RBP17.67■□□□□ 0.42
VIM-208ENST00000497849 CFAP221Q4G0U5 840 aa17.67■□□□□ 0.42
VIM-208ENST00000497849 RHBDF2Q6PJF5 856 aa17.67■□□□□ 0.42
VIM-208ENST00000497849 RABEPKQ7Z6M1 372 aa17.67■□□□□ 0.42
VIM-208ENST00000497849 SLCO6A1Q86UG4 719 aa17.67■□□□□ 0.42
VIM-208ENST00000497849 NOL7Q9UMY1 257 aaKnown RBP17.67■□□□□ 0.42
VIM-208ENST00000497849 PCDHB9Q9Y5E1 797 aa17.67■□□□□ 0.42
VIM-208ENST00000497849 TISP43B9A030 160 aa17.66■□□□□ 0.42
VIM-208ENST00000497849 K7ENM7 598 aa17.66■□□□□ 0.42
VIM-208ENST00000497849 SCAMP3O14828 347 aaKnown RBP17.66■□□□□ 0.42
VIM-208ENST00000497849 HCRTO43612 131 aa17.66■□□□□ 0.42
VIM-208ENST00000497849 SYPP08247 313 aa17.66■□□□□ 0.42
VIM-208ENST00000497849 GABRG2P18507 467 aa17.66■□□□□ 0.42
VIM-208ENST00000497849 KDSRQ06136 332 aa17.66■□□□□ 0.42
VIM-208ENST00000497849 SCARA3Q6AZY7 606 aa17.66■□□□□ 0.42
VIM-208ENST00000497849 SLC36A4Q6YBV0 504 aa17.66■□□□□ 0.42
VIM-208ENST00000497849 OSTM1Q86WC4 334 aa17.66■□□□□ 0.42
VIM-208ENST00000497849 NAXDQ8IW45 347 aa17.66■□□□□ 0.42
VIM-208ENST00000497849 SCN4BQ8IWT1 228 aa17.66■□□□□ 0.42
VIM-208ENST00000497849 PHTF2Q8N3S3 785 aa17.66■□□□□ 0.42
VIM-208ENST00000497849 FBXO18Q8NFZ0 1043 aa17.66■□□□□ 0.42
VIM-208ENST00000497849 RNF38Q9H0F5 515 aa17.66■□□□□ 0.42
VIM-208ENST00000497849 ARHGEF4Q9NR80 690 aa17.66■□□□□ 0.42
VIM-208ENST00000497849 CALCOCO1Q9P1Z2 691 aa17.66■□□□□ 0.42
VIM-208ENST00000497849 SHROOM3Q8TF72 1996 aa17.66■□□□□ 0.42
VIM-208ENST00000497849 IGHV1OR15-9A0A0B4J2B8 117 aa17.65■□□□□ 0.42
VIM-208ENST00000497849 A0A1W2PQD8 194 aa17.65■□□□□ 0.42
VIM-208ENST00000497849 EIF5BO60841 1220 aaKnown RBP17.65■□□□□ 0.42
VIM-208ENST00000497849 CBFA2T3O75081 653 aa17.65■□□□□ 0.42
VIM-208ENST00000497849 PRPHP41219 470 aa17.65■□□□□ 0.42
VIM-208ENST00000497849 GRIA2P42262 883 aa17.65■□□□□ 0.42
VIM-208ENST00000497849 TNFRSF4P43489 277 aa17.65■□□□□ 0.42
VIM-208ENST00000497849 ANAPC15P60006 121 aa17.65■□□□□ 0.42
VIM-208ENST00000497849 USP46P62068 366 aa17.65■□□□□ 0.42
VIM-208ENST00000497849 SLC7A9P82251 487 aa17.65■□□□□ 0.42
VIM-208ENST00000497849 RESTQ13127 1097 aa17.65■□□□□ 0.42
VIM-208ENST00000497849 CRELD2Q6UXH1 353 aaPredicted RBP17.65■□□□□ 0.42
VIM-208ENST00000497849 DTHD1Q6ZMT9 781 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms