RNA–Protein interactions for RNA: ENST00000497139.5

VEGFA-215, Transcript of vascular endothelial growth factor A, human

TSL 1 (best)

Gene VEGFA, Length 2,746 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-215	ENST00000497139	MEIS1	O00470	390 aa		13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	POLR2M	P0CAP2	368 aa		13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	NMT1	P30419	496 aa	Known RBP	13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	MCCD1	P59942	119 aa	Predicted RBP	13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	ZNF423	Q2M1K9	1284 aa		13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	RABGAP1L	Q5R372	815 aa		13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	ZFP1	Q6P2D0	407 aa		13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	SLC47A2	Q86VL8	602 aa		13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	GIPC3	Q8TF64	312 aa		13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	MRRF	Q96E11	262 aa	Known RBP	13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	JMJD4	Q9H9V9	463 aa		13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	ALG13	Q9NP73	1137 aa	Known RBP	13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	SIRPG	Q9P1W8	387 aa		13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	IGSF9	Q9P2J2	1179 aa		13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	POMP	Q9Y244	141 aa		13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	FARP1	Q9Y4F1	1045 aa	Predicted RBP	13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139		E5RJQ4	531 aa		13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	CYP26A1	O43174	497 aa		13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	ITGAV	P06756	1048 aa		13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	MYL4	P12829	197 aa		13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	FUT4	P22083	530 aa		13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	ALDH3B2	P48448	385 aa		13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	VAMP7	P51809	220 aa		13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	ARID3B	Q8IVW6	561 aa	Predicted RBP	13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	C12orf56	Q8IXR9	622 aa		13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	E2F7	Q96AV8	911 aa		13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	KCNK16	Q96T55	309 aa		13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	TMOD2	Q9NZR1	351 aa		13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	MINPP1	Q9UNW1	487 aa		13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	FAM32A	Q9Y421	112 aa	Known RBP	13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	IKBKG	Q9Y6K9	419 aa		13.54	□□□□□ -0.24
VEGFA-215	ENST00000497139	ZNFX1	Q9P2E3	1918 aa	Known RBP	13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	FAM170A	A1A519	330 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	FBP2	O00757	339 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	SPAG6	O75602	509 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	ATP6V1B1	P15313	513 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	ALDH18A1	P54886	795 aa	Known RBP	13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	AQP5	P55064	265 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	NOP14	P78316	857 aa	Known RBP	13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	COG2	Q14746	738 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	CLPP	Q16740	277 aa	Predicted RBP	13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	TEX44	Q53QW1	395 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	CAPN12	Q6ZSI9	719 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	TICAM1	Q8IUC6	712 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	PPIL6	Q8IXY8	311 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	RCOR2	Q8IZ40	523 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	NKD2	Q969F2	451 aa	Predicted RBP	13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	SNX27	Q96L92	541 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	PRPF18	Q99633	342 aa	Known RBP	13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	FHDC1	Q9C0D6	1143 aa	Predicted RBP	13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	NRDE2	Q9H7Z3	1164 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	KIAA1522	Q9P206	1035 aa	Predicted RBP	13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	BCAP29	Q9UHQ4	241 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	CNOT11	Q9UKZ1	510 aa	Known RBP	13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	SNCAIP	Q9Y6H5	919 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	COL4A1	P02462	1669 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	ROBO1	Q9Y6N7	1651 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139		H0YJX3	145 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139		H3BSA7	217 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	GOLGA8R	I6L899	631 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	ZBTB5	O15062	677 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	SNN	O75324	88 aa	Predicted RBP	13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	PTPN7	P35236	360 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	NAA20	P61599	178 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	BST1	Q10588	318 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	PTK7	Q13308	1070 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	OLFML1	Q6UWY5	402 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	C1orf186	Q6ZWK4	172 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	KSR1	Q8IVT5	923 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	FAM178B	Q8IXR5	827 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	MCOLN2	Q8IZK6	566 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	FBXW8	Q8N3Y1	598 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	DDX1	Q92499	740 aa	Known RBP	13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	KCNN1	Q92952	543 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	BORCS5	Q969J3	196 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	ACAP3	Q96P50	834 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	FIZ1	Q96SL8	496 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	CGREF1	Q99674	301 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	PALMD	Q9NP74	551 aa		13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	MYH14	Q7Z406	1995 aa	Known RBP	13.53	□□□□□ -0.24
VEGFA-215	ENST00000497139	COL16A1	Q07092	1604 aa	Predicted RBP	13.52	□□□□□ -0.24
VEGFA-215	ENST00000497139	COPE	O14579	308 aa		13.52	□□□□□ -0.24
VEGFA-215	ENST00000497139	CLASP2	O75122	1294 aa	Known RBP	13.52	□□□□□ -0.24
VEGFA-215	ENST00000497139	BAIAP3	O94812	1187 aa		13.52	□□□□□ -0.24
VEGFA-215	ENST00000497139	CAPNS1	P04632	268 aa		13.52	□□□□□ -0.24
VEGFA-215	ENST00000497139	C6orf222	P0C671	652 aa	Predicted RBP	13.52	□□□□□ -0.24
VEGFA-215	ENST00000497139	BMP3	P12645	472 aa		13.52	□□□□□ -0.24
VEGFA-215	ENST00000497139	PRDX6	P30041	224 aa		13.52	□□□□□ -0.24
VEGFA-215	ENST00000497139	TUBA4A	P68366	448 aa		13.52	□□□□□ -0.24
VEGFA-215	ENST00000497139	TMPRSS15	P98073	1019 aa		13.52	□□□□□ -0.24
VEGFA-215	ENST00000497139	EFTUD2	Q15029	972 aa	Known RBP eCLIP	13.52	□□□□□ -0.24	1e-19	■■■■■ 38.8
VEGFA-215	ENST00000497139	MAP7D1	Q3KQU3	841 aa		13.52	□□□□□ -0.24
VEGFA-215	ENST00000497139	MDH1B	Q5I0G3	518 aa		13.52	□□□□□ -0.24
VEGFA-215	ENST00000497139	RC3H1	Q5TC82	1133 aa	Known RBP	13.52	□□□□□ -0.24
VEGFA-215	ENST00000497139	ARC	Q7LC44	396 aa		13.52	□□□□□ -0.24
VEGFA-215	ENST00000497139	SLC44A1	Q8WWI5	657 aa		13.52	□□□□□ -0.24
VEGFA-215	ENST00000497139	CRYGN	Q8WXF5	182 aa		13.52	□□□□□ -0.24
VEGFA-215	ENST00000497139	CMTM5	Q96DZ9	223 aa		13.52	□□□□□ -0.24
VEGFA-215	ENST00000497139	RILP	Q96NA2	401 aa		13.52	□□□□□ -0.24
VEGFA-215	ENST00000497139	NUF2	Q9BZD4	464 aa		13.52	□□□□□ -0.24

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