RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 CISD2Q8N5K1 135 aaKnown RBP5.49□□□□□ -1.53
CSMD3-208ENST00000497026 PCSK9Q8NBP7 692 aaKnown RBP5.49□□□□□ -1.53
CSMD3-208ENST00000497026 ZNF397Q8NF99 534 aaPredicted RBP5.49□□□□□ -1.53
CSMD3-208ENST00000497026 SCFD2Q8WU76 684 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 GLT1D1Q96MS3 346 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 DHRS4Q9BTZ2 278 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 KCND1Q9NSA2 647 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 SNTG2Q9NY99 539 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 SEC63Q9UGP8 760 aaKnown RBP5.49□□□□□ -1.53
CSMD3-208ENST00000497026 NDOR1Q9UHB4 597 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 ATP11BQ9Y2G3 1177 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 MORC2Q9Y6X9 1032 aaPredicted RBP5.49□□□□□ -1.53
CSMD3-208ENST00000497026 ELP1O95163 1332 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 MYH15Q9Y2K3 1946 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 RANBP2P49792 3224 aaKnown RBP5.49□□□□□ -1.53
CSMD3-208ENST00000497026 CEP290O15078 2479 aa5.49□□□□□ -1.53
CSMD3-208ENST00000497026 TRIM43BA6NCK2 446 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 ARVCFO00192 962 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 EIF3JO75822 258 aaKnown RBP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 MMP3P08254 477 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 MYCLP12524 364 aaPredicted RBP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 UBA1P22314 1058 aaKnown RBP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 ANAPC15P60006 121 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 PSMC6P62333 389 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 PURAQ00577 322 aaKnown RBP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 SP2Q02086 613 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 GPS2Q13227 327 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 PFKFB3Q16875 520 aaPredicted RBP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 CPZQ66K79 652 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 EP400NLQ6ZTU2 488 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 SEPT14Q6ZU15 432 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 ANKRD33Q7Z3H0 272 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 ZC3H7AQ8IWR0 971 aaKnown RBP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 OR6J1Q8NGC5 347 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 PHKBQ93100 1093 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 TRIM43Q96BQ3 446 aaPredicted RBP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 PGBD1Q96JS3 809 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 INPP4AQ96PE3 977 aaPredicted RBP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 MPHOSPH6Q99547 160 aaKnown RBP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 DNAJC7Q99615 494 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 PSTPIP2Q9H939 334 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 SPC25Q9HBM1 224 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 NCOA5Q9HCD5 579 aaKnown RBP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 LMBRD1Q9NUN5 540 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 ADAM29Q9UKF5 820 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 CYP46A1Q9Y6A2 500 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 ESYT3A0FGR9 886 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 SYCE3A1L190 88 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 B4DLN1 442 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 H0Y858 1186 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 hCG_1984214I3L0E3 225 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 PRPF3O43395 683 aaKnown RBP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 PQBP1O60828 265 aaKnown RBP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 DTNBO60941 627 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 CABYRO75952 493 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 RASGRP1O95267 797 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 LARGE1O95461 756 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 GH1P01241 217 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 CD4P01730 458 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 CLTBP09497 229 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 ZNF888P0CJ79 500 aaPredicted RBP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 SCG2P13521 617 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 IFNAR1P17181 557 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 CALRP27797 417 aaKnown RBP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 CCND2P30279 289 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 CSF2RBP32927 897 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 ICAM3P32942 547 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 CPT1AP50416 773 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 FXR1P51114 621 aaKnown RBP eCLIP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 MRPL12P52815 198 aaKnown RBP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 TPM4P67936 248 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 GABREP78334 506 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 CCT2P78371 535 aaKnown RBP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 DBPQ10586 325 aaPredicted RBP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 ST3GAL1Q11201 340 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 SCN5AQ14524 2016 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 SURF1Q15526 300 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 HSDL1Q3SXM5 330 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 ZNF585AQ6P3V2 769 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 CIR1Q86X95 450 aaPredicted RBP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 DHX37Q8IY37 1157 aaKnown RBP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 CNPY4Q8N129 248 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 ZNF713Q8N859 430 aaPredicted RBP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 AFG1LQ8WV93 481 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 KAT2BQ92831 832 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 ZNF274Q96GC6 653 aaPredicted RBP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 GNRHR2Q96P88 292 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 LRRC37BQ96QE4 947 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 SRPK1Q96SB4 655 aaKnown RBP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 NCAPGQ9BPX3 1015 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 RNF26Q9BY78 433 aaPredicted RBP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 BARHL2Q9NY43 387 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 ARHGAP28Q9P2N2 729 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 FEZ2Q9UHY8 353 aaPredicted RBP5.48□□□□□ -1.53
CSMD3-208ENST00000497026 TBX21Q9UL17 535 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 TPCN1Q9ULQ1 816 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 PCDHA6Q9UN73 950 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 PAXBP1Q9Y5B6 917 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 ATP23Q9Y6H3 246 aa5.48□□□□□ -1.53
CSMD3-208ENST00000497026 TRIOBPQ9H2D6 2365 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms