RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 NFATC1O95644 943 aa13.24□□□□□ -0.29
CPSF3-204ENST00000489403 CST3P01034 146 aaPredicted RBP13.24□□□□□ -0.29
CPSF3-204ENST00000489403 MPLP40238 635 aa13.24□□□□□ -0.29
CPSF3-204ENST00000489403 PSMD2Q13200 908 aa13.24□□□□□ -0.29
CPSF3-204ENST00000489403 STK38Q15208 465 aa13.24□□□□□ -0.29
CPSF3-204ENST00000489403 MAPRE1Q15691 268 aaKnown RBP13.24□□□□□ -0.29
CPSF3-204ENST00000489403 MDH1BQ5I0G3 518 aa13.24□□□□□ -0.29
CPSF3-204ENST00000489403 DENND5BQ6ZUT9 1274 aa13.24□□□□□ -0.29
CPSF3-204ENST00000489403 EPM2AIP1Q7L775 607 aaPredicted RBP13.24□□□□□ -0.29
CPSF3-204ENST00000489403 RDH13Q8NBN7 331 aa13.24□□□□□ -0.29
CPSF3-204ENST00000489403 ZNF507Q8TCN5 953 aa13.24□□□□□ -0.29
CPSF3-204ENST00000489403 CEP295NLQ96MC4 621 aa13.24□□□□□ -0.29
CPSF3-204ENST00000489403 MRPL45Q9BRJ2 306 aaKnown RBP13.24□□□□□ -0.29
CPSF3-204ENST00000489403 TTLL2Q9BWV7 592 aa13.24□□□□□ -0.29
CPSF3-204ENST00000489403 KIAA1586Q9HCI6 787 aa13.24□□□□□ -0.29
CPSF3-204ENST00000489403 AGPAT3Q9NRZ7 376 aa13.24□□□□□ -0.29
CPSF3-204ENST00000489403 SDK1Q7Z5N4 2213 aa13.24□□□□□ -0.29
CPSF3-204ENST00000489403 LAMA1P25391 3075 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 ANTXRLA6NF34 631 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 F8VP50 259 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 LEFTY2O00292 366 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 DCLK1O15075 740 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 SPTLC2O15270 562 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 APBB3O95704 486 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 DLATP10515 647 aaKnown RBP13.23□□□□□ -0.29
CPSF3-204ENST00000489403 PFKLP17858 780 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 ANXA13P27216 316 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 OPRD1P41143 372 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 PDE6CP51160 858 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 CACNA2D1P54289 1103 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 ASIC1P78348 528 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 C1QBPQ07021 282 aaKnown RBP13.23□□□□□ -0.29
CPSF3-204ENST00000489403 NR1H3Q13133 447 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 SNRNP35Q16560 246 aaKnown RBP13.23□□□□□ -0.29
CPSF3-204ENST00000489403 GAB4Q2WGN9 574 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 STPG1Q5TH74 334 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 MYCBPAPQ8TBZ2 947 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 DHX58Q96C10 678 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 CGRRF1Q99675 332 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 LRRC27Q9C0I9 530 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 RNF38Q9H0F5 515 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 CUEDC2Q9H467 287 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 DPEP3Q9H4B8 488 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 VPS45Q9NRW7 570 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 TMEM30AQ9NV96 361 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 TRPM5Q9NZQ8 1165 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 EBF1Q9UH73 591 aa13.23□□□□□ -0.29
CPSF3-204ENST00000489403 ZNF840PA6NDX5 716 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 K7EQS6 105 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 CLIC2O15247 247 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 PPP6R2O75170 966 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 TACC1O75410 805 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 OLFM2O95897 454 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 OAS1P00973 400 aaKnown RBP13.22□□□□□ -0.29
CPSF3-204ENST00000489403 CYP17A1P05093 508 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 TNNI1P19237 187 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 GNL1P36915 607 aaPredicted RBP13.22□□□□□ -0.29
CPSF3-204ENST00000489403 DGKEP52429 567 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 SEC13P55735 322 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 NOP14P78316 857 aaKnown RBP13.22□□□□□ -0.29
CPSF3-204ENST00000489403 SLC7A9P82251 487 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 CYP24A1Q07973 514 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 PSMD6Q15008 389 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 ELF2Q15723 593 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 FAM26FQ5R3K3 315 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 TCEAL6Q6IPX3 200 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 CNNM4Q6P4Q7 775 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 HS2ST1Q7LGA3 356 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 FILIP1Q7Z7B0 1213 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 NELFCDQ8IXH7 590 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 OR6B3Q8NGW1 331 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 USP33Q8TEY7 942 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 TCEAL3Q969E4 200 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 C8orf48Q96LL4 319 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 FNBP1Q96RU3 617 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 TPSD1Q9BZJ3 242 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 GZF1Q9H116 711 aaPredicted RBP13.22□□□□□ -0.29
CPSF3-204ENST00000489403 SNX25Q9H3E2 840 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 CPQQ9Y646 472 aa13.22□□□□□ -0.29
CPSF3-204ENST00000489403 UBE4BO95155 1302 aa13.21□□□□□ -0.29
CPSF3-204ENST00000489403 CLDN5O00501 218 aa13.21□□□□□ -0.29
CPSF3-204ENST00000489403 RHOBTB1O94844 696 aa13.21□□□□□ -0.29
CPSF3-204ENST00000489403 PMLP29590 882 aa13.21□□□□□ -0.29
CPSF3-204ENST00000489403 PPP3CCP48454 512 aa13.21□□□□□ -0.29
CPSF3-204ENST00000489403 CYP2J2P51589 502 aa13.21□□□□□ -0.29
CPSF3-204ENST00000489403 TNNC1P63316 161 aa13.21□□□□□ -0.29
CPSF3-204ENST00000489403 AMPD3Q01432 767 aa13.21□□□□□ -0.29
CPSF3-204ENST00000489403 EHHADHQ08426 723 aa13.21□□□□□ -0.29
CPSF3-204ENST00000489403 WDR72Q3MJ13 1102 aa13.21□□□□□ -0.29
CPSF3-204ENST00000489403 C2orf27AQ580R0 203 aa13.21□□□□□ -0.29
CPSF3-204ENST00000489403 N4BP2L1Q5TBK1 243 aaPredicted RBP13.21□□□□□ -0.29
CPSF3-204ENST00000489403 SHC4Q6S5L8 630 aa13.21□□□□□ -0.29
CPSF3-204ENST00000489403 UNC13DQ70J99 1090 aa13.21□□□□□ -0.29
CPSF3-204ENST00000489403 RASSF3Q86WH2 238 aa13.21□□□□□ -0.29
CPSF3-204ENST00000489403 XXYLT1Q8NBI6 393 aa13.21□□□□□ -0.29
CPSF3-204ENST00000489403 TSTD1Q8NFU3 115 aa13.21□□□□□ -0.29
CPSF3-204ENST00000489403 SCFD1Q8WVM8 642 aa13.21□□□□□ -0.29
CPSF3-204ENST00000489403 ZNF516Q92618 1163 aa13.21□□□□□ -0.29
CPSF3-204ENST00000489403 CCDC127Q96BQ5 260 aa13.21□□□□□ -0.29
CPSF3-204ENST00000489403 C7orf25Q9BPX7 421 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms