RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 RGS9BPQ6ZS82 235 aa18.8■□□□□ 0.6
VIM-206ENST00000487938 OTOAQ7RTW8 1153 aa18.8■□□□□ 0.6
VIM-206ENST00000487938 ZC3H18Q86VM9 953 aaKnown RBP18.8■□□□□ 0.6
VIM-206ENST00000487938 C1orf127Q8N9H9 656 aa18.8■□□□□ 0.6
VIM-206ENST00000487938 ELOVL4Q9GZR5 314 aa18.8■□□□□ 0.6
VIM-206ENST00000487938 C2orf40Q9H1Z8 148 aa18.8■□□□□ 0.6
VIM-206ENST00000487938 CDT1Q9H211 546 aa18.8■□□□□ 0.6
VIM-206ENST00000487938 ALG13Q9NP73 1137 aaKnown RBP18.8■□□□□ 0.6
VIM-206ENST00000487938 USP18Q9UMW8 372 aa18.8■□□□□ 0.6
VIM-206ENST00000487938 LOC102724159A0A0B4J2E5 919 aa18.8■□□□□ 0.6
VIM-206ENST00000487938 IGKV6-21A0A0C4DH24 114 aa18.8■□□□□ 0.6
VIM-206ENST00000487938 LACTBL1A8MY62 500 aa18.8■□□□□ 0.6
VIM-206ENST00000487938 GPR25O00155 361 aa18.8■□□□□ 0.6
VIM-206ENST00000487938 NDC80O14777 642 aa18.8■□□□□ 0.6
VIM-206ENST00000487938 MICAL2O94851 1124 aa18.8■□□□□ 0.6
VIM-206ENST00000487938 TRUB2O95900 331 aaKnown RBP18.8■□□□□ 0.6
VIM-206ENST00000487938 RBP3P10745 1247 aa18.8■□□□□ 0.6
VIM-206ENST00000487938 GBP2P32456 591 aaPredicted RBP18.8■□□□□ 0.6
VIM-206ENST00000487938 YARSP54577 528 aaKnown RBP18.8■□□□□ 0.6
VIM-206ENST00000487938 PWP2Q15269 919 aaKnown RBP18.8■□□□□ 0.6
VIM-206ENST00000487938 TAZQ16635 292 aa18.8■□□□□ 0.6
VIM-206ENST00000487938 EFCAB12Q6NXP0 572 aa18.8■□□□□ 0.6
VIM-206ENST00000487938 IGDCC3Q8IVU1 814 aa18.8■□□□□ 0.6
VIM-206ENST00000487938 UTP4Q969X6 686 aaKnown RBP18.8■□□□□ 0.6
VIM-206ENST00000487938 L3MBTL3Q96JM7 780 aaPredicted RBP18.8■□□□□ 0.6
VIM-206ENST00000487938 FZD8Q9H461 694 aa18.8■□□□□ 0.6
VIM-206ENST00000487938 CHMP2BQ9UQN3 213 aa18.8■□□□□ 0.6
VIM-206ENST00000487938 IRX3P78415 501 aaPredicted RBP18.79■□□□□ 0.6
VIM-206ENST00000487938 DPYSL3Q14195 570 aa18.79■□□□□ 0.6
VIM-206ENST00000487938 SEPT7Q16181 437 aaKnown RBP18.79■□□□□ 0.6
VIM-206ENST00000487938 CMASQ8NFW8 434 aaPredicted RBP18.79■□□□□ 0.6
VIM-206ENST00000487938 SPATA18Q8TC71 538 aa18.79■□□□□ 0.6
VIM-206ENST00000487938 TCP10LQ8TDR4 215 aa18.79■□□□□ 0.6
VIM-206ENST00000487938 FNIP1Q8TF40 1166 aa18.79■□□□□ 0.6
VIM-206ENST00000487938 BCO2Q9BYV7 579 aa18.79■□□□□ 0.6
VIM-206ENST00000487938 TXLNGQ9NUQ3 528 aa18.79■□□□□ 0.6
VIM-206ENST00000487938 M0QYV0 167 aa18.79■□□□□ 0.6
VIM-206ENST00000487938 RNF8O76064 485 aa18.79■□□□□ 0.6
VIM-206ENST00000487938 ELF1P32519 619 aa18.79■□□□□ 0.6
VIM-206ENST00000487938 SKIV2L2P42285 1042 aaKnown RBP18.79■□□□□ 0.6
VIM-206ENST00000487938 IGBP1P78318 339 aa18.79■□□□□ 0.6
VIM-206ENST00000487938 PTPN11Q06124 597 aaPredicted RBP18.79■□□□□ 0.6
VIM-206ENST00000487938 CELF3Q5SZQ8 465 aaKnown RBP18.79■□□□□ 0.6
VIM-206ENST00000487938 JADE1Q6IE81 842 aa18.79■□□□□ 0.6
VIM-206ENST00000487938 ZNF449Q6P9G9 518 aa18.79■□□□□ 0.6
VIM-206ENST00000487938 PDIK1LQ8N165 341 aa18.79■□□□□ 0.6
VIM-206ENST00000487938 DCAKDQ8WVC6 231 aa18.79■□□□□ 0.6
VIM-206ENST00000487938 C10orf82Q8WW14 230 aa18.79■□□□□ 0.6
VIM-206ENST00000487938 HEXIM2Q96MH2 286 aaKnown RBP18.79■□□□□ 0.6
VIM-206ENST00000487938 SPATA33Q96N06 139 aa18.79■□□□□ 0.6
VIM-206ENST00000487938 PEBP4Q96S96 227 aa18.79■□□□□ 0.6
VIM-206ENST00000487938 ACSS3Q9H6R3 686 aa18.79■□□□□ 0.6
VIM-206ENST00000487938 EBF2Q9HAK2 575 aa18.79■□□□□ 0.6
VIM-206ENST00000487938 NPHS2Q9NP85 383 aa18.79■□□□□ 0.6
VIM-206ENST00000487938 GEMIN8Q9NWZ8 242 aaKnown RBP18.79■□□□□ 0.6
VIM-206ENST00000487938 SLC17A7Q9P2U7 560 aa18.79■□□□□ 0.6
VIM-206ENST00000487938 APOC4-APOC2K7ER74 178 aa18.78■□□□□ 0.6
VIM-206ENST00000487938 SOCS7O14512 581 aa18.78■□□□□ 0.6
VIM-206ENST00000487938 APOC2P02655 101 aa18.78■□□□□ 0.6
VIM-206ENST00000487938 OVGP1Q12889 678 aa18.78■□□□□ 0.6
VIM-206ENST00000487938 RASA2Q15283 850 aa18.78■□□□□ 0.6
VIM-206ENST00000487938 FAM102AQ5T9C2 384 aaPredicted RBP18.78■□□□□ 0.6
VIM-206ENST00000487938 NSMCE1Q8WV22 266 aa18.78■□□□□ 0.6
VIM-206ENST00000487938 TMEM176AQ96HP8 235 aa18.78■□□□□ 0.6
VIM-206ENST00000487938 ADPGKQ9BRR6 497 aa18.78■□□□□ 0.6
VIM-206ENST00000487938 ASCC2Q9H1I8 757 aaPredicted RBP18.78■□□□□ 0.6
VIM-206ENST00000487938 PPCSQ9HAB8 311 aa18.78■□□□□ 0.6
VIM-206ENST00000487938 A0A1B0GUA9 196 aa18.77■□□□□ 0.6
VIM-206ENST00000487938 E7ESA3 106 aa18.77■□□□□ 0.6
VIM-206ENST00000487938 MCF2LO15068 1137 aa18.77■□□□□ 0.6
VIM-206ENST00000487938 ZWINTO95229 277 aa18.77■□□□□ 0.6
VIM-206ENST00000487938 CCND1P24385 295 aa18.77■□□□□ 0.6
VIM-206ENST00000487938 ALDH3A1P30838 453 aa18.77■□□□□ 0.6
VIM-206ENST00000487938 ELK3P41970 407 aa18.77■□□□□ 0.6
VIM-206ENST00000487938 MBTD1Q05BQ5 628 aa18.77■□□□□ 0.6
VIM-206ENST00000487938 KLHL38Q2WGJ6 581 aa18.77■□□□□ 0.6
VIM-206ENST00000487938 TLDC1Q6P9B6 456 aa18.77■□□□□ 0.6
VIM-206ENST00000487938 DARS2Q6PI48 645 aaKnown RBP18.77■□□□□ 0.6
VIM-206ENST00000487938 MZB1Q8WU39 189 aa18.77■□□□□ 0.6
VIM-206ENST00000487938 DHRS4Q9BTZ2 278 aa18.77■□□□□ 0.6
VIM-206ENST00000487938 FRMD8P1Q9BZ68 369 aaPredicted RBP18.77■□□□□ 0.6
VIM-206ENST00000487938 GPRC5DQ9NZD1 345 aa18.77■□□□□ 0.6
VIM-206ENST00000487938 WDR35Q9P2L0 1181 aa18.77■□□□□ 0.6
VIM-206ENST00000487938 GAS2O43903 313 aaKnown RBP18.77■□□□□ 0.6
VIM-206ENST00000487938 AVILO75366 819 aa18.77■□□□□ 0.6
VIM-206ENST00000487938 LGR5O75473 907 aa18.77■□□□□ 0.6
VIM-206ENST00000487938 GRAP2O75791 330 aa18.77■□□□□ 0.6
VIM-206ENST00000487938 STAG3L1P0CL83 205 aa18.77■□□□□ 0.6
VIM-206ENST00000487938 T-ENOLP0DO92 83 aa18.77■□□□□ 0.6
VIM-206ENST00000487938 CDH6P55285 790 aa18.77■□□□□ 0.6
VIM-206ENST00000487938 CDO1Q16878 200 aa18.77■□□□□ 0.6
VIM-206ENST00000487938 C15orf59Q2T9L4 293 aaPredicted RBP18.77■□□□□ 0.6
VIM-206ENST00000487938 C1orf228Q6PIY5 440 aa18.77■□□□□ 0.6
VIM-206ENST00000487938 FBXO16Q8IX29 292 aaPredicted RBP18.77■□□□□ 0.6
VIM-206ENST00000487938 DCTN4Q9UJW0 460 aa18.77■□□□□ 0.6
VIM-206ENST00000487938 DCTN3O75935 186 aa18.76■□□□□ 0.59
VIM-206ENST00000487938 CBX6O95503 412 aa18.76■□□□□ 0.59
VIM-206ENST00000487938 GPD2P43304 727 aa18.76■□□□□ 0.59
VIM-206ENST00000487938 ATP11AP98196 1134 aa18.76■□□□□ 0.59
VIM-206ENST00000487938 PLEKHG4Q58EX7 1191 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms