RNA–Protein interactions for RNA: ENST00000487188.1

VPS13D-209, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 3,990 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-209ENST00000487188 TMC7Q7Z402 723 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 FBXO33Q7Z6M2 555 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 AMIGO2Q86SJ2 522 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 RSPH3Q86UC2 560 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 PPIL6Q8IXY8 311 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 RTKN2Q8IZC4 609 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 DDHD1Q8NEL9 900 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 ZFP28Q8NHY6 868 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 PAIP1Q9H074 479 aaKnown RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 ADAMTS6Q9UKP5 1117 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 SPATA31A1Q5TZJ5 1347 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 MYOCOSA0A1B0GUC4 107 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 GIPC1O14908 333 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 MCF2LO15068 1137 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 LSM1O15116 133 aaKnown RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 TP73O15350 636 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 BIRC5O15392 142 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 P4HA2O15460 535 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 LIASO43766 372 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 TBC1D12O60347 775 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 WEE2P0C1S8 567 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 ZNF24P17028 368 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 EIF2B2P49770 351 aaKnown RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 ATXN3P54252 364 aaPredicted RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 OXCT1P55809 520 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 KCNQ4P56696 695 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 RPL26P61254 145 aaKnown RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 PSMC1P62191 440 aaKnown RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 PHEXP78562 749 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 GPSM2P81274 684 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 MSLNQ13421 630 aaPredicted RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 PSMD6Q15008 389 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 TCEAL1Q15170 157 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 CLEC16AQ2KHT3 1053 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 RALGPS1Q5JS13 557 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 UGT2A3Q6UWM9 527 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 PACS1Q6VY07 963 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 C16orf86Q6ZW13 317 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 CCDC33Q8N5R6 958 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 EXD1Q8NHP7 514 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 CELF1Q92879 486 aaKnown RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 CMTM5Q96DZ9 223 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 VPS50Q96JG6 964 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 FAM20AQ96MK3 541 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 ACCSQ96QU6 501 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 SENP7Q9BQF6 1050 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 HERPUD2Q9BSE4 406 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 TMEM121Q9BTD3 319 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 CCDC68Q9H2F9 335 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 STRIP2Q9ULQ0 834 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 TELO2Q9Y4R8 837 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 DLEC1Q9Y238 1755 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 KIF13BQ9NQT8 1826 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 TMEM221A6NGB7 291 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 TTLL13PA6NNM8 815 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 H3BSA7 217 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 MATN2O00339 956 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 GAS7O60861 476 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 SERPINA6P08185 405 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 PORP16435 677 aaPredicted RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 CD151P48509 253 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 RPS8P62241 208 aaKnown RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 PPP3CAQ08209 521 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 ZNF543Q08ER8 600 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 AP3B2Q13367 1082 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 GRM2Q14416 872 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 NKX1-1Q15270 411 aaPredicted RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 SF3B3Q15393 1217 aaKnown RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 PDCD4Q53EL6 469 aaKnown RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 WDR44Q5JSH3 913 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 ADGRD1Q6QNK2 874 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 PQLC1Q8N2U9 271 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 IRGQQ8WZA9 623 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 DHX38Q92620 1227 aaKnown RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 TMEM206Q9H813 350 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 PCDH9Q9HC56 1237 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 XPO7Q9UIA9 1087 aaKnown RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 RABGEF1Q9UJ41 708 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 NOCTQ9UK39 431 aaKnown RBP6.5□□□□□ -1.37
VPS13D-209ENST00000487188 TMED5Q9Y3A6 229 aa6.5□□□□□ -1.37
VPS13D-209ENST00000487188 SHANK3Q9BYB0 1731 aa6.49□□□□□ -1.37
VPS13D-209ENST00000487188 EML1O00423 815 aa6.49□□□□□ -1.37
VPS13D-209ENST00000487188 HMOX2P30519 316 aa6.49□□□□□ -1.37
VPS13D-209ENST00000487188 GTF2H1P32780 548 aa6.49□□□□□ -1.37
VPS13D-209ENST00000487188 FLOT2Q14254 428 aa6.49□□□□□ -1.37
VPS13D-209ENST00000487188 TLR1Q15399 786 aa6.49□□□□□ -1.37
VPS13D-209ENST00000487188 QRICH1Q2TAL8 776 aa6.49□□□□□ -1.37
VPS13D-209ENST00000487188 ERFEQ4G0M1 354 aa6.49□□□□□ -1.37
VPS13D-209ENST00000487188 CIAPIN1Q6FI81 312 aa6.49□□□□□ -1.37
VPS13D-209ENST00000487188 ZCCHC23Q6ZST2 131 aa6.49□□□□□ -1.37
VPS13D-209ENST00000487188 PTF1AQ7RTS3 328 aa6.49□□□□□ -1.37
VPS13D-209ENST00000487188 FAM71AQ8IYT1 594 aa6.49□□□□□ -1.37
VPS13D-209ENST00000487188 RCOR2Q8IZ40 523 aa6.49□□□□□ -1.37
VPS13D-209ENST00000487188 AHI1Q8N157 1196 aa6.49□□□□□ -1.37
VPS13D-209ENST00000487188 GLIS1Q8NBF1 620 aa6.49□□□□□ -1.37
VPS13D-209ENST00000487188 TTC13Q8NBP0 860 aa6.49□□□□□ -1.37
VPS13D-209ENST00000487188 TSPAN14Q8NG11 270 aa6.49□□□□□ -1.37
VPS13D-209ENST00000487188 KCNK13Q9HB14 408 aa6.49□□□□□ -1.37
VPS13D-209ENST00000487188 PLK2Q9NYY3 685 aa6.49□□□□□ -1.37
VPS13D-209ENST00000487188 DNAJC16Q9Y2G8 782 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms