RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 CNGB3Q9NQW8 809 aa10.72□□□□□ -0.69
USP39-215ENST00000481409 CTTNBP2NLQ9P2B4 639 aa10.72□□□□□ -0.69
USP39-215ENST00000481409 HCSTQ9UBK5 93 aa10.72□□□□□ -0.69
USP39-215ENST00000481409 AFF4Q9UHB7 1163 aaKnown RBP10.72□□□□□ -0.69
USP39-215ENST00000481409 MSRAQ9UJ68 235 aa10.72□□□□□ -0.69
USP39-215ENST00000481409 PTPRDP23468 1912 aa10.72□□□□□ -0.69
USP39-215ENST00000481409 A0A1W2PPC1 479 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 TCRBV5S1A1TA0A578 114 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 RCCD1A6NED2 376 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 USP27XA6NNY8 438 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 LPXNO60711 386 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 LILRB3O75022 631 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 ABLIM3O94929 683 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 ERBB2P04626 1255 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 CFHP08603 1231 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 CPB1P15086 417 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 ABCB4P21439 1286 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 CTNNB1P35222 781 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 PBX3P40426 434 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 SLC1A1P43005 524 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 NOP2P46087 812 aaKnown RBP10.71□□□□□ -0.69
USP39-215ENST00000481409 NDUFV1P49821 464 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 NAP1L1P55209 391 aaKnown RBP10.71□□□□□ -0.69
USP39-215ENST00000481409 ERVK-21P61565 698 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 TUBB2AQ13885 445 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 SLC39A12Q504Y0 691 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 RAB41Q5JT25 222 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 EFHC1Q5JVL4 640 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 C9orf50Q5SZB4 431 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 C11orf63Q6NUN7 778 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 PMF1Q6P1K2 205 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 DNAJC24Q6P3W2 148 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 MMS22LQ6ZRQ5 1243 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 BEND5Q7L4P6 421 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 KLHL23Q8NBE8 558 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 UBA3Q8TBC4 463 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 ZNF564Q8TBZ8 553 aaPredicted RBP10.71□□□□□ -0.69
USP39-215ENST00000481409 SPATA17Q96L03 361 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 CPXM1Q96SM3 734 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 C11orf70Q9BRQ4 267 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 TUBB2BQ9BVA1 445 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 SELENOOQ9BVL4 669 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 NUP85Q9BW27 656 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 VN1R3Q9BXE9 311 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 EMILIN2Q9BXX0 1053 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 PACSIN1Q9BY11 444 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 FBXO44Q9H4M3 255 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 KRT82Q9NSB4 513 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 DPP7Q9UHL4 492 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 JRKLQ9Y4A0 524 aa10.71□□□□□ -0.69
USP39-215ENST00000481409 MTMR11A4FU01 709 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 MYO1FO00160 1098 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 HCRTO43612 131 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 RTN3O95197 1032 aaPredicted RBP10.7□□□□□ -0.7
USP39-215ENST00000481409 CALCAP01258 141 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 ADH1AP07327 375 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 KRT3P12035 628 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 ATF2P15336 505 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 BDNFP23560 247 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 RRM1P23921 792 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 MAN1A1P33908 653 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 SLC6A3Q01959 620 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 MAMLD1Q13495 774 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 PIGHQ14442 188 aaPredicted RBP10.7□□□□□ -0.7
USP39-215ENST00000481409 SMC1AQ14683 1233 aaKnown RBP10.7□□□□□ -0.7
USP39-215ENST00000481409 PPP1R15BQ5SWA1 713 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 SLC26A9Q7LBE3 791 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 TAS1R1Q7RTX1 841 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 SLFN11Q7Z7L1 901 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 PIGZQ86VD9 579 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 LRRTM3Q86VH5 581 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 XYLT1Q86Y38 959 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 TDHQ8IZJ6 230 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 SIX6OS1Q8N1H7 587 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 TPCN2Q8NHX9 752 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 KIF18AQ8NI77 898 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 FEZF2Q8TBJ5 459 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 SMOQ99835 787 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 CLSTN3Q9BQT9 956 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 TLR9Q9NR96 1032 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 ST7Q9NRC1 585 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 RRN3Q9NYV6 651 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 IP6K2Q9UHH9 426 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 CYTH4Q9UIA0 394 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 CDY1Q9Y6F8 540 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 MYH10P35580 1976 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 PATJQ8NI35 1801 aa10.7□□□□□ -0.7
USP39-215ENST00000481409 MACROD2A1Z1Q3 448 aa10.69□□□□□ -0.7
USP39-215ENST00000481409 TMEM191CA6NGB0 347 aa10.69□□□□□ -0.7
USP39-215ENST00000481409 SPDYE4A6NLX3 237 aa10.69□□□□□ -0.7
USP39-215ENST00000481409 MIF4GDA9UHW6 222 aaKnown RBP10.69□□□□□ -0.7
USP39-215ENST00000481409 HHLA1C9JL84 531 aa10.69□□□□□ -0.7
USP39-215ENST00000481409 E5RJQ4 531 aa10.69□□□□□ -0.7
USP39-215ENST00000481409 H0YGN5 161 aa10.69□□□□□ -0.7
USP39-215ENST00000481409 H3BNC9 293 aa10.69□□□□□ -0.7
USP39-215ENST00000481409 CLDN5O00501 218 aa10.69□□□□□ -0.7
USP39-215ENST00000481409 HSF2BPO75031 334 aa10.69□□□□□ -0.7
USP39-215ENST00000481409 HAPLN1P10915 354 aaPredicted RBP10.69□□□□□ -0.7
USP39-215ENST00000481409 PRLRP16471 622 aa10.69□□□□□ -0.7
USP39-215ENST00000481409 ELF1P32519 619 aa10.69□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms