RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 HAO1Q9UJM8 370 aa11.33□□□□□ -0.6
VPS52-217ENST00000478934 PHTF1Q9UMS5 762 aa11.33□□□□□ -0.6
VPS52-217ENST00000478934 ANP32DO95626 131 aa11.33□□□□□ -0.6
VPS52-217ENST00000478934 KRT4P19013 534 aa11.33□□□□□ -0.6
VPS52-217ENST00000478934 BASP1P80723 227 aaKnown RBP11.33□□□□□ -0.6
VPS52-217ENST00000478934 ATP11AP98196 1134 aa11.33□□□□□ -0.6
VPS52-217ENST00000478934 GRM1Q13255 1194 aa11.33□□□□□ -0.6
VPS52-217ENST00000478934 TTLL12Q14166 644 aaPredicted RBP11.33□□□□□ -0.6
VPS52-217ENST00000478934 MTFR1Q15390 333 aa11.33□□□□□ -0.6
VPS52-217ENST00000478934 FAM102AQ5T9C2 384 aaPredicted RBP11.33□□□□□ -0.6
VPS52-217ENST00000478934 FAXCQ5TGI0 409 aa11.33□□□□□ -0.6
VPS52-217ENST00000478934 CENPUQ71F23 418 aa11.33□□□□□ -0.6
VPS52-217ENST00000478934 FBF1Q8TES7 1133 aa11.33□□□□□ -0.6
VPS52-217ENST00000478934 NSMCE1Q8WV22 266 aa11.33□□□□□ -0.6
VPS52-217ENST00000478934 RSAD2Q8WXG1 361 aa11.33□□□□□ -0.6
VPS52-217ENST00000478934 FAM167AQ96KS9 214 aa11.33□□□□□ -0.6
VPS52-217ENST00000478934 ZNF518BQ9C0D4 1074 aa11.33□□□□□ -0.6
VPS52-217ENST00000478934 RXFP1Q9HBX9 757 aa11.33□□□□□ -0.6
VPS52-217ENST00000478934 PCDH9Q9HC56 1237 aa11.33□□□□□ -0.6
VPS52-217ENST00000478934 UBN1Q9NPG3 1134 aa11.33□□□□□ -0.6
VPS52-217ENST00000478934 DDX56Q9NY93 547 aaKnown RBP11.33□□□□□ -0.6
VPS52-217ENST00000478934 GINS2Q9Y248 185 aa11.33□□□□□ -0.6
VPS52-217ENST00000478934 LTBP3Q9NS15 1303 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 WDR90Q96KV7 1748 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 BRCA1P38398 1863 aaKnown RBP11.32□□□□□ -0.6
VPS52-217ENST00000478934 A0A0G2JLL6 359 aaPredicted RBP11.32□□□□□ -0.6
VPS52-217ENST00000478934 PPEF2O14830 753 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 ABHD2P08910 425 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 ELF1P32519 619 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 GPD2P43304 727 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 EIF3EP60228 445 aaKnown RBP11.32□□□□□ -0.6
VPS52-217ENST00000478934 TMEM62Q0P6H9 643 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 AMHR2Q16671 573 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 PRRT2Q7Z6L0 340 aaPredicted RBP11.32□□□□□ -0.6
VPS52-217ENST00000478934 GPC2Q8N158 579 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 NAT8LQ8N9F0 302 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 PYROXD1Q8WU10 500 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 MMP19Q99542 508 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 TRIM56Q9BRZ2 755 aaKnown RBP11.32□□□□□ -0.6
VPS52-217ENST00000478934 BCO2Q9BYV7 579 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 YY1AP1Q9H869 796 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.32□□□□□ -0.6
VPS52-217ENST00000478934 XPO7Q9UIA9 1087 aaKnown RBP11.32□□□□□ -0.6
VPS52-217ENST00000478934 USP18Q9UMW8 372 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 CHMP2BQ9UQN3 213 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 AKT3Q9Y243 479 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 NR2E3Q9Y5X4 410 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 NUMBLQ9Y6R0 609 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 E5RJQ4 531 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 DIAPH2O60879 1101 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 CILPO75339 1184 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 CBX6O95503 412 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 C22orf31O95567 290 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 TRUB2O95900 331 aaKnown RBP11.32□□□□□ -0.6
VPS52-217ENST00000478934 RBP3P10745 1247 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 ARF4P18085 180 aaPredicted RBP11.32□□□□□ -0.6
VPS52-217ENST00000478934 GBP2P32456 591 aaPredicted RBP11.32□□□□□ -0.6
VPS52-217ENST00000478934 NDST1P52848 882 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 IL9RQ01113 521 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 KCTD2Q14681 263 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 ZC3H12AQ5D1E8 599 aaKnown RBP11.32□□□□□ -0.6
VPS52-217ENST00000478934 BBS12Q6ZW61 710 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 CYP4V2Q6ZWL3 525 aaPredicted RBP11.32□□□□□ -0.6
VPS52-217ENST00000478934 ILDR2Q71H61 639 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 PLPPR4Q7Z2D5 763 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 AGGF1Q8N302 714 aaeCLIP11.32□□□□□ -0.6
VPS52-217ENST00000478934 SPATA18Q8TC71 538 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 UTP4Q969X6 686 aaKnown RBP11.32□□□□□ -0.6
VPS52-217ENST00000478934 TMEM176AQ96HP8 235 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 PDZD7Q9H5P4 517 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 SLC17A7Q9P2U7 560 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 DCTN4Q9UJW0 460 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 CHKBQ9Y259 395 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 TNFSF13BQ9Y275 285 aa11.32□□□□□ -0.6
VPS52-217ENST00000478934 FAM155BO75949 473 aa11.31□□□□□ -0.6
VPS52-217ENST00000478934 TFE3P19532 575 aaPredicted RBP11.31□□□□□ -0.6
VPS52-217ENST00000478934 ADRA1DP25100 572 aa11.31□□□□□ -0.6
VPS52-217ENST00000478934 MSH2P43246 934 aa11.31□□□□□ -0.6
VPS52-217ENST00000478934 CDH6P55285 790 aa11.31□□□□□ -0.6
VPS52-217ENST00000478934 OR6B2Q6IFH4 312 aa11.31□□□□□ -0.6
VPS52-217ENST00000478934 SCYL2Q6P3W7 929 aa11.31□□□□□ -0.6
VPS52-217ENST00000478934 LVRNQ6Q4G3 990 aa11.31□□□□□ -0.6
VPS52-217ENST00000478934 VSIG1Q86XK7 387 aa11.31□□□□□ -0.6
VPS52-217ENST00000478934 NETO2Q8NC67 525 aa11.31□□□□□ -0.6
VPS52-217ENST00000478934 RXFP2Q8WXD0 754 aa11.31□□□□□ -0.6
VPS52-217ENST00000478934 HPDLQ96IR7 371 aa11.31□□□□□ -0.6
VPS52-217ENST00000478934 SMC6Q96SB8 1091 aa11.31□□□□□ -0.6
VPS52-217ENST00000478934 ADPGKQ9BRR6 497 aa11.31□□□□□ -0.6
VPS52-217ENST00000478934 B3GNT5Q9BYG0 378 aa11.31□□□□□ -0.6
VPS52-217ENST00000478934 C2orf40Q9H1Z8 148 aa11.31□□□□□ -0.6
VPS52-217ENST00000478934 LHX5Q9H2C1 402 aa11.31□□□□□ -0.6
VPS52-217ENST00000478934 FAM49BQ9NUQ9 324 aa11.31□□□□□ -0.6
VPS52-217ENST00000478934 TRIP11Q15643 1979 aa11.31□□□□□ -0.6
VPS52-217ENST00000478934 TYROBPO43914 113 aa11.31□□□□□ -0.6
VPS52-217ENST00000478934 SKAP2O75563 359 aaPredicted RBP11.31□□□□□ -0.6
VPS52-217ENST00000478934 SLC8A1P32418 973 aa11.31□□□□□ -0.6
VPS52-217ENST00000478934 PTPN7P35236 360 aa11.31□□□□□ -0.6
VPS52-217ENST00000478934 ATXN1P54253 815 aaKnown RBP11.31□□□□□ -0.6
VPS52-217ENST00000478934 ZNF268Q14587 947 aaPredicted RBP11.31□□□□□ -0.6
VPS52-217ENST00000478934 CA9Q16790 459 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms