RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 FAM159BA6NKW6 160 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 TCP10L2B9ZVM9 353 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 CDKN2BP42772 138 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 NAB1Q13506 487 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 TEDDM1Q5T9Z0 273 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 ARFGAP1Q8N6T3 406 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 TMEM161BQ8NDZ6 487 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 RAET1EQ8TD07 263 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 SLC20A1Q8WUM9 679 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 TTC17Q96AE7 1141 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 ZNF778Q96MU6 729 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 GALNT8Q9NY28 637 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 TUBA8Q9NY65 449 aaPredicted RBP5.6□□□□□ -1.51
SYNE1-220ENST00000471834 TRIM33Q9UPN9 1127 aa5.6□□□□□ -1.51
SYNE1-220ENST00000471834 GSTT1P30711 240 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 GNL1P36915 607 aaPredicted RBP5.59□□□□□ -1.51
SYNE1-220ENST00000471834 LIMK1P53667 647 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 SPATS1Q496A3 300 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 IFNLR1Q8IU57 520 aaPredicted RBP5.59□□□□□ -1.51
SYNE1-220ENST00000471834 TRIB2Q92519 343 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 NMUR2Q9GZQ4 415 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 MFSD1Q9H3U5 465 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 BTG4Q9NY30 223 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 RAB26Q9ULW5 256 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 CFAP69A5D8W1 941 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 SH3BP5O60239 455 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 ARRB2P32121 409 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 HPCAP84074 193 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 TNFAIP1Q13829 316 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 NFIXQ14938 502 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 FAM47AQ5JRC9 791 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 KRT39Q6A163 491 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 CHSY3Q70JA7 882 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 GPBP1Q86WP2 473 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 TRAF3IP1Q8TDR0 691 aaPredicted RBP5.59□□□□□ -1.51
SYNE1-220ENST00000471834 LRFN2Q9ULH4 789 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 USP17L3A6NCW0 530 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 USP17L4A6NCW7 530 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 FCHO1O14526 889 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 TRDMT1O14717 391 aaKnown RBP5.59□□□□□ -1.51
SYNE1-220ENST00000471834 AP1G2O75843 785 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 KRT36O76013 467 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 HAUS5O94927 633 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 RARRES1P49788 294 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 RAD23BP54727 409 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 PEX3P56589 373 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 ZBTB16Q05516 673 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 PPP2R5DQ14738 602 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 SLC39A4Q6P5W5 647 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 SEPT14Q6ZU15 432 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 USP17L1Q7RTZ2 530 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 ZNF410Q86VK4 478 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 ABRAQ8N0Z2 381 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 ZNF420Q8TAQ5 688 aaPredicted RBP5.59□□□□□ -1.51
SYNE1-220ENST00000471834 ZBED3Q96IU2 234 aaPredicted RBP5.59□□□□□ -1.51
SYNE1-220ENST00000471834 TRABDQ9H4I3 376 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 BCAS3Q9H6U6 928 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 TMEM8AQ9HCN3 771 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 MRGBPQ9NV56 204 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 IGSF9Q9P2J2 1179 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 SCOCQ9UIL1 159 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 PRPF19Q9UMS4 504 aaKnown RBP5.59□□□□□ -1.51
SYNE1-220ENST00000471834 PCDHB13Q9Y5F0 798 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 DPYSL4O14531 572 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 ENTPD3O75355 529 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 BMP10O95393 424 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 EIF4BP23588 611 aaKnown RBP5.59□□□□□ -1.51
SYNE1-220ENST00000471834 PKN2Q16513 984 aaKnown RBP5.59□□□□□ -1.51
SYNE1-220ENST00000471834 MAP7D1Q3KQU3 841 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 CFAP157Q5JU67 520 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 DYMQ7RTS9 669 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 XXYLT1Q8NBI6 393 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 GALNT6Q8NCL4 622 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 HM13Q8TCT9 377 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 AKT1S1Q96B36 256 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 HIC2Q96JB3 615 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 CD209Q9NNX6 404 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 WDR37Q9Y2I8 494 aa5.59□□□□□ -1.51
SYNE1-220ENST00000471834 IGKV6D-21A0A0A0MT36 114 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 TLDC2A0PJX2 215 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 USP17L5A8MUK1 530 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 GCNT3O95395 438 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 AKR1B1P15121 316 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 GABRB2P47870 512 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 BPIFB4P59827 614 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 GALNT1Q10472 559 aaPredicted RBP5.59□□□□□ -1.52
SYNE1-220ENST00000471834 C4orf22Q6V702 233 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 RHOT1Q8IXI2 618 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 RDH13Q8NBN7 331 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 ZBTB10Q96DT7 871 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 ANKRD60Q9BZ19 345 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 XPNPEP1Q9NQW7 623 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 THAP12O43422 761 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 BAIAP3O94812 1187 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 PYGBP11216 843 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 CTBSQ01459 385 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 PLOD1Q02809 727 aaPredicted RBP5.59□□□□□ -1.52
SYNE1-220ENST00000471834 GSTM4Q03013 218 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 AOC3Q16853 763 aa5.59□□□□□ -1.52
SYNE1-220ENST00000471834 KLHL38Q2WGJ6 581 aa5.59□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms