RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 MST1LQ2TV78 715 aa5□□□□□ -1.61
VPS13A-210ENST00000471439 ANO4Q32M45 955 aa5□□□□□ -1.61
VPS13A-210ENST00000471439 DCAF17Q5H9S7 520 aaPredicted RBP5□□□□□ -1.61
VPS13A-210ENST00000471439 RRP12Q5JTH9 1297 aaKnown RBP5□□□□□ -1.61
VPS13A-210ENST00000471439 NXNQ6DKJ4 435 aa5□□□□□ -1.61
VPS13A-210ENST00000471439 C17orf99Q6UX52 265 aa5□□□□□ -1.61
VPS13A-210ENST00000471439 Q6ZVL8 140 aa5□□□□□ -1.61
VPS13A-210ENST00000471439 LDLRAD3Q86YD5 345 aa5□□□□□ -1.61
VPS13A-210ENST00000471439 ZNF276Q8N554 614 aa5□□□□□ -1.61
VPS13A-210ENST00000471439 SUPT20HQ8NEM7 779 aa5□□□□□ -1.61
VPS13A-210ENST00000471439 TTC8Q8TAM2 541 aa5□□□□□ -1.61
VPS13A-210ENST00000471439 SLC25A43Q8WUT9 341 aaPredicted RBP5□□□□□ -1.61
VPS13A-210ENST00000471439 RIN2Q8WYP3 895 aaPredicted RBP5□□□□□ -1.61
VPS13A-210ENST00000471439 HOXB13Q92826 284 aaPredicted RBP5□□□□□ -1.61
VPS13A-210ENST00000471439 IKZF4Q9H2S9 585 aa5□□□□□ -1.61
VPS13A-210ENST00000471439 SLC12A5Q9H2X9 1139 aa5□□□□□ -1.61
VPS13A-210ENST00000471439 OGDHLQ9ULD0 1010 aa5□□□□□ -1.61
VPS13A-210ENST00000471439 IPPQ9Y573 584 aa5□□□□□ -1.61
VPS13A-210ENST00000471439 IGSF10Q6WRI0 2623 aa5□□□□□ -1.61
VPS13A-210ENST00000471439 LOC400499M0QZD8 3231 aa5□□□□□ -1.61
VPS13A-210ENST00000471439 CCL15-CCL14A0A0B4J2E2 113 aa4.99□□□□□ -1.61
VPS13A-210ENST00000471439 CCDC154A6NI56 674 aa4.99□□□□□ -1.61
VPS13A-210ENST00000471439 HTRA2O43464 458 aaPredicted RBP4.99□□□□□ -1.61
VPS13A-210ENST00000471439 SCAF4O95104 1147 aaKnown RBP4.99□□□□□ -1.61
VPS13A-210ENST00000471439 IL10RAQ13651 578 aa4.99□□□□□ -1.61
VPS13A-210ENST00000471439 NOMO1Q15155 1222 aa4.99□□□□□ -1.61
VPS13A-210ENST00000471439 CCL15Q16663 113 aa4.99□□□□□ -1.61
VPS13A-210ENST00000471439 CRY2Q49AN0 593 aa4.99□□□□□ -1.61
VPS13A-210ENST00000471439 MUM1L1Q5H9M0 696 aa4.99□□□□□ -1.61
VPS13A-210ENST00000471439 CRB2Q5IJ48 1285 aa4.99□□□□□ -1.61
VPS13A-210ENST00000471439 MRGPREQ86SM8 312 aa4.99□□□□□ -1.61
VPS13A-210ENST00000471439 MIER2Q8N344 545 aa4.99□□□□□ -1.61
VPS13A-210ENST00000471439 SLC35B2Q8TB61 432 aa4.99□□□□□ -1.61
VPS13A-210ENST00000471439 ZNF480Q8WV37 535 aa4.99□□□□□ -1.61
VPS13A-210ENST00000471439 KAT5Q92993 513 aa4.99□□□□□ -1.61
VPS13A-210ENST00000471439 FATE1Q969F0 183 aa4.99□□□□□ -1.61
VPS13A-210ENST00000471439 CHFRQ96EP1 664 aa4.99□□□□□ -1.61
VPS13A-210ENST00000471439 CDC5LQ99459 802 aaKnown RBP4.99□□□□□ -1.61
VPS13A-210ENST00000471439 NEU1Q99519 415 aa4.99□□□□□ -1.61
VPS13A-210ENST00000471439 GREM2Q9H772 168 aa4.99□□□□□ -1.61
VPS13A-210ENST00000471439 CPA4Q9UI42 421 aa4.99□□□□□ -1.61
VPS13A-210ENST00000471439 INTUQ9ULD6 942 aa4.99□□□□□ -1.61
VPS13A-210ENST00000471439 PNMA8BQ9ULN7 279 aaPredicted RBP4.99□□□□□ -1.61
VPS13A-210ENST00000471439 ITPR1Q14643 2758 aa4.99□□□□□ -1.61
VPS13A-210ENST00000471439 RTL9Q8NET4 1388 aa4.99□□□□□ -1.61
VPS13A-210ENST00000471439 AOX1Q06278 1338 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 SPTA1P02549 2419 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 OTOFQ9HC10 1997 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 FBN3Q75N90 2809 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 VSTM5A8MXK1 200 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 AKR1B10O60218 316 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 LPXNO60711 386 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 GSPT1P15170 499 aaKnown RBP4.98□□□□□ -1.61
VPS13A-210ENST00000471439 MAKP20794 623 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 SLC6A9P48067 706 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 FLT3LGP49771 235 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 ZNF280AP59817 542 aaPredicted RBP4.98□□□□□ -1.61
VPS13A-210ENST00000471439 MEF2AQ02078 507 aaPredicted RBP4.98□□□□□ -1.61
VPS13A-210ENST00000471439 DMWDQ09019 674 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 RRS1Q15050 365 aaKnown RBP4.98□□□□□ -1.61
VPS13A-210ENST00000471439 IFIT1BQ5T764 474 aaKnown RBP4.98□□□□□ -1.61
VPS13A-210ENST00000471439 CXorf57Q6NSI4 855 aaKnown RBP4.98□□□□□ -1.61
VPS13A-210ENST00000471439 PCSK4Q6UW60 755 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 B3GNT9Q6UX72 402 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 DOK3Q7L591 496 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 GPRIN1Q7Z2K8 1008 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 FAM83AQ86UY5 434 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 KIAA2013Q8IYS2 634 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 TRMT2AQ8IZ69 625 aaKnown RBP4.98□□□□□ -1.61
VPS13A-210ENST00000471439 OR10H5Q8NGA6 315 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 NUP88Q99567 741 aaPredicted RBP4.98□□□□□ -1.61
VPS13A-210ENST00000471439 ADI1Q9BV57 179 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 DBNDD1Q9H9R9 158 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 GABBR1Q9UBS5 961 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 DDX20Q9UHI6 824 aaKnown RBP4.98□□□□□ -1.61
VPS13A-210ENST00000471439 EIF2B4Q9UI10 523 aaKnown RBP4.98□□□□□ -1.61
VPS13A-210ENST00000471439 SIK3Q9Y2K2 1263 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 CHST2Q9Y4C5 530 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 RTL1A6NKG5 1358 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 C2CD3Q4AC94 2353 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 KALRNO60229 2985 aa4.98□□□□□ -1.61
VPS13A-210ENST00000471439 GAKO14976 1311 aa4.97□□□□□ -1.61
VPS13A-210ENST00000471439 IGF2RP11717 2491 aa4.97□□□□□ -1.61
VPS13A-210ENST00000471439 ZNF185O15231 689 aa4.97□□□□□ -1.61
VPS13A-210ENST00000471439 SUV39H1O43463 412 aa4.97□□□□□ -1.61
VPS13A-210ENST00000471439 AP1G1O43747 822 aa4.97□□□□□ -1.61
VPS13A-210ENST00000471439 WDHD1O75717 1129 aaPredicted RBP4.97□□□□□ -1.61
VPS13A-210ENST00000471439 POU2F2P09086 479 aa4.97□□□□□ -1.61
VPS13A-210ENST00000471439 PDCP20941 246 aa4.97□□□□□ -1.61
VPS13A-210ENST00000471439 CYP2C19P33261 490 aa4.97□□□□□ -1.61
VPS13A-210ENST00000471439 RNASE9P60153 205 aaKnown RBP4.97□□□□□ -1.61
VPS13A-210ENST00000471439 MGAT2Q10469 447 aa4.97□□□□□ -1.61
VPS13A-210ENST00000471439 HSP90AB2PQ58FF8 381 aa4.97□□□□□ -1.61
VPS13A-210ENST00000471439 C19orf54Q5BKX5 351 aa4.97□□□□□ -1.61
VPS13A-210ENST00000471439 CCDC129Q6ZRS4 1044 aa4.97□□□□□ -1.61
VPS13A-210ENST00000471439 NOL8Q76FK4 1167 aaKnown RBP4.97□□□□□ -1.61
VPS13A-210ENST00000471439 RHOUQ7L0Q8 258 aa4.97□□□□□ -1.61
VPS13A-210ENST00000471439 VRK3Q8IV63 474 aa4.97□□□□□ -1.61
VPS13A-210ENST00000471439 SUGP1Q8IWZ8 645 aaKnown RBP4.97□□□□□ -1.61
VPS13A-210ENST00000471439 GPR156Q8NFN8 814 aa4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms