RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 C2orf78A6NCI8 922 aa18.66■□□□□ 0.58
COL7A1-208ENST00000470076 FOXD2O60548 495 aaPredicted RBP18.66■□□□□ 0.58
COL7A1-208ENST00000470076 RNF40O75150 1001 aa18.66■□□□□ 0.58
COL7A1-208ENST00000470076 STAU1O95793 577 aaKnown RBP18.66■□□□□ 0.58
COL7A1-208ENST00000470076 F13A1P00488 732 aa18.66■□□□□ 0.58
COL7A1-208ENST00000470076 EGFP01133 1207 aa18.66■□□□□ 0.58
COL7A1-208ENST00000470076 PPP3CCP48454 512 aa18.66■□□□□ 0.58
COL7A1-208ENST00000470076 TNNC1P63316 161 aa18.66■□□□□ 0.58
COL7A1-208ENST00000470076 NR1H3Q13133 447 aa18.66■□□□□ 0.58
COL7A1-208ENST00000470076 TRPC3Q13507 836 aa18.66■□□□□ 0.58
COL7A1-208ENST00000470076 CSRP2Q16527 193 aa18.66■□□□□ 0.58
COL7A1-208ENST00000470076 EML3Q32P44 896 aa18.66■□□□□ 0.58
COL7A1-208ENST00000470076 WDR72Q3MJ13 1102 aa18.66■□□□□ 0.58
COL7A1-208ENST00000470076 FOXD4L6Q3SYB3 417 aaPredicted RBP18.66■□□□□ 0.58
COL7A1-208ENST00000470076 RESP18Q5W5W9 173 aa18.66■□□□□ 0.58
COL7A1-208ENST00000470076 FOXD4L3Q6VB84 417 aaPredicted RBP18.66■□□□□ 0.58
COL7A1-208ENST00000470076 HSCBQ8IWL3 235 aa18.66■□□□□ 0.58
COL7A1-208ENST00000470076 CAMKK1Q8N5S9 505 aa18.66■□□□□ 0.58
COL7A1-208ENST00000470076 TTC16Q8NEE8 873 aa18.66■□□□□ 0.58
COL7A1-208ENST00000470076 OR6B3Q8NGW1 331 aa18.66■□□□□ 0.58
COL7A1-208ENST00000470076 SH3RF2Q8TEC5 729 aa18.66■□□□□ 0.58
COL7A1-208ENST00000470076 C8orf48Q96LL4 319 aa18.66■□□□□ 0.58
COL7A1-208ENST00000470076 TTLL2Q9BWV7 592 aa18.66■□□□□ 0.58
COL7A1-208ENST00000470076 FBRSL1Q9HCM7 1045 aaKnown RBP18.66■□□□□ 0.58
COL7A1-208ENST00000470076 TRPM5Q9NZQ8 1165 aa18.66■□□□□ 0.58
COL7A1-208ENST00000470076 PCDHA7Q9UN72 937 aa18.66■□□□□ 0.58
COL7A1-208ENST00000470076 WNT6Q9Y6F9 365 aa18.66■□□□□ 0.58
COL7A1-208ENST00000470076 CASP1P29466 404 aa18.65■□□□□ 0.58
COL7A1-208ENST00000470076 HOXC13P31276 330 aa18.65■□□□□ 0.58
COL7A1-208ENST00000470076 ATICP31939 592 aa18.65■□□□□ 0.58
COL7A1-208ENST00000470076 NOP14P78316 857 aaKnown RBP18.65■□□□□ 0.58
COL7A1-208ENST00000470076 KNOP1Q1ED39 458 aaKnown RBP18.65■□□□□ 0.58
COL7A1-208ENST00000470076 MDH1BQ5I0G3 518 aa18.65■□□□□ 0.58
COL7A1-208ENST00000470076 FAM160A2Q8N612 972 aaPredicted RBP18.65■□□□□ 0.58
COL7A1-208ENST00000470076 GOLGA5Q8TBA6 731 aa18.65■□□□□ 0.58
COL7A1-208ENST00000470076 NETO1Q8TDF5 533 aa18.65■□□□□ 0.58
COL7A1-208ENST00000470076 GAB3Q8WWW8 586 aa18.65■□□□□ 0.58
COL7A1-208ENST00000470076 CD101Q93033 1021 aa18.65■□□□□ 0.58
COL7A1-208ENST00000470076 SLC39A2Q9NP94 309 aa18.65■□□□□ 0.58
COL7A1-208ENST00000470076 CFAP45Q9UL16 551 aa18.65■□□□□ 0.58
COL7A1-208ENST00000470076 DYNC1LI1Q9Y6G9 523 aaKnown RBP18.65■□□□□ 0.58
COL7A1-208ENST00000470076 F8VP50 259 aa18.64■□□□□ 0.57
COL7A1-208ENST00000470076 EXOC3O60645 756 aa18.64■□□□□ 0.57
COL7A1-208ENST00000470076 RPP40O75818 363 aaKnown RBP18.64■□□□□ 0.57
COL7A1-208ENST00000470076 PTPN1P18031 435 aaKnown RBP18.64■□□□□ 0.57
COL7A1-208ENST00000470076 AFMP43652 599 aa18.64■□□□□ 0.57
COL7A1-208ENST00000470076 USP46P62068 366 aa18.64■□□□□ 0.57
COL7A1-208ENST00000470076 CUL4BQ13620 913 aa18.64■□□□□ 0.57
COL7A1-208ENST00000470076 PRR23CQ6ZRP0 262 aa18.64■□□□□ 0.57
COL7A1-208ENST00000470076 CEP57L1Q8IYX8 460 aa18.64■□□□□ 0.57
COL7A1-208ENST00000470076 KIAA1958Q8N8K9 716 aa18.64■□□□□ 0.57
COL7A1-208ENST00000470076 ZNF516Q92618 1163 aa18.64■□□□□ 0.57
COL7A1-208ENST00000470076 SYAP1Q96A49 352 aaPredicted RBP18.64■□□□□ 0.57
COL7A1-208ENST00000470076 ELOVL4Q9GZR5 314 aa18.64■□□□□ 0.57
COL7A1-208ENST00000470076 GZF1Q9H116 711 aaPredicted RBP18.64■□□□□ 0.57
COL7A1-208ENST00000470076 NME7Q9Y5B8 376 aa18.64■□□□□ 0.57
COL7A1-208ENST00000470076 ZNF840PA6NDX5 716 aa18.63■□□□□ 0.57
COL7A1-208ENST00000470076 A8MXQ7 604 aa18.63■□□□□ 0.57
COL7A1-208ENST00000470076 PHACTR2O75167 634 aa18.63■□□□□ 0.57
COL7A1-208ENST00000470076 AKAP3O75969 853 aa18.63■□□□□ 0.57
COL7A1-208ENST00000470076 NFATC1O95644 943 aa18.63■□□□□ 0.57
COL7A1-208ENST00000470076 PXNP49023 591 aaPredicted RBP18.63■□□□□ 0.57
COL7A1-208ENST00000470076 AP3M2P53677 418 aa18.63■□□□□ 0.57
COL7A1-208ENST00000470076 MYL6P60660 151 aa18.63■□□□□ 0.57
COL7A1-208ENST00000470076 NAIF1Q69YI7 327 aaPredicted RBP18.63■□□□□ 0.57
COL7A1-208ENST00000470076 CACNA2D4Q7Z3S7 1137 aa18.63■□□□□ 0.57
COL7A1-208ENST00000470076 CCDC26Q8TAB7 109 aa18.63■□□□□ 0.57
COL7A1-208ENST00000470076 ACDQ96AP0 544 aa18.63■□□□□ 0.57
COL7A1-208ENST00000470076 LOXL4Q96JB6 756 aa18.63■□□□□ 0.57
COL7A1-208ENST00000470076 XYLT2Q9H1B5 865 aa18.63■□□□□ 0.57
COL7A1-208ENST00000470076 NXF1Q9UBU9 619 aaKnown RBP18.63■□□□□ 0.57
COL7A1-208ENST00000470076 MYO16Q9Y6X6 1858 aa18.63■□□□□ 0.57
COL7A1-208ENST00000470076 EML5Q05BV3 1969 aa18.62■□□□□ 0.57
COL7A1-208ENST00000470076 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP18.62■□□□□ 0.57
COL7A1-208ENST00000470076 LOC105378220A0A1B0GUY1 285 aaPredicted RBP18.62■□□□□ 0.57
COL7A1-208ENST00000470076 SLC30A4O14863 429 aa18.62■□□□□ 0.57
COL7A1-208ENST00000470076 SLFN14P0C7P3 912 aa18.62■□□□□ 0.57
COL7A1-208ENST00000470076 CCDC192P0DO97 292 aa18.62■□□□□ 0.57
COL7A1-208ENST00000470076 SLC7A9P82251 487 aa18.62■□□□□ 0.57
COL7A1-208ENST00000470076 TDRD10Q5VZ19 366 aaKnown RBP18.62■□□□□ 0.57
COL7A1-208ENST00000470076 SYT13Q7L8C5 426 aa18.62■□□□□ 0.57
COL7A1-208ENST00000470076 B3GALNT2Q8NCR0 500 aa18.62■□□□□ 0.57
COL7A1-208ENST00000470076 RPLP0P6Q8NHW5 317 aa18.62■□□□□ 0.57
COL7A1-208ENST00000470076 SLITRK1Q96PX8 696 aa18.62■□□□□ 0.57
COL7A1-208ENST00000470076 LINC00597Q9H2U6 94 aa18.62■□□□□ 0.57
COL7A1-208ENST00000470076 DPEP3Q9H4B8 488 aa18.62■□□□□ 0.57
COL7A1-208ENST00000470076 VRTNQ9H8Y1 702 aa18.62■□□□□ 0.57
COL7A1-208ENST00000470076 RCOR1Q9UKL0 485 aa18.62■□□□□ 0.57
COL7A1-208ENST00000470076 KIAA1549LQ6ZVL6 1849 aa18.62■□□□□ 0.57
COL7A1-208ENST00000470076 TPRP12270 2363 aaKnown RBP18.61■□□□□ 0.57
COL7A1-208ENST00000470076 DCDC2BA2VCK2 349 aa18.61■□□□□ 0.57
COL7A1-208ENST00000470076 LEFTY2O00292 366 aa18.61■□□□□ 0.57
COL7A1-208ENST00000470076 OLFM2O95897 454 aa18.61■□□□□ 0.57
COL7A1-208ENST00000470076 CLDN10P78369 228 aa18.61■□□□□ 0.57
COL7A1-208ENST00000470076 ZXDBP98169 803 aa18.61■□□□□ 0.57
COL7A1-208ENST00000470076 BIRC3Q13489 604 aa18.61■□□□□ 0.57
COL7A1-208ENST00000470076 PARD3BQ8TEW8 1205 aa18.61■□□□□ 0.57
COL7A1-208ENST00000470076 TMEM174Q8WUU8 243 aa18.61■□□□□ 0.57
COL7A1-208ENST00000470076 EZH1Q92800 747 aaPredicted RBP18.61■□□□□ 0.57
COL7A1-208ENST00000470076 ZNF518BQ9C0D4 1074 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms