RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 TRIM72Q6ZMU5 477 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 ZNF662Q6ZS27 426 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 TMC7Q7Z402 723 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 PHF13Q86YI8 300 aaPredicted RBP6.3□□□□□ -1.4
USP39-213ENST00000467885 SCUBE3Q8IX30 993 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 DCP1BQ8IZD4 617 aaKnown RBP6.3□□□□□ -1.4
USP39-213ENST00000467885 MCOLN2Q8IZK6 566 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 TMEM35BQ8NCS4 154 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 SLC2A14Q8TDB8 520 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 KCTD13Q8WZ19 329 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 VCPIP1Q96JH7 1222 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 SAMD11Q96NU1 681 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 HERC2P3Q9BVR0 1158 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 PACSIN1Q9BY11 444 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 RHOBTB2Q9BYZ6 727 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 LACRTQ9GZZ8 138 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 ZBP1Q9H171 429 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 NKX2-4Q9H2Z4 354 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 CERS4Q9HA82 394 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 SLC28A3Q9HAS3 691 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 SLC24A3Q9HC58 644 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 MRPL17Q9NRX2 175 aaKnown RBP6.3□□□□□ -1.4
USP39-213ENST00000467885 FAM49BQ9NUQ9 324 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 STK39Q9UEW8 545 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 MSRAQ9UJ68 235 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 SALL4Q9UJQ4 1053 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 TSPAN16Q9UKR8 245 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 TFR2Q9UP52 801 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 SLC27A5Q9Y2P5 690 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 RWDD3Q9Y3V2 267 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 ANK1P16157 1881 aa6.3□□□□□ -1.4
USP39-213ENST00000467885 TNRC18O15417 2968 aaPredicted RBP6.3□□□□□ -1.4
USP39-213ENST00000467885 WDR27A2RRH5 827 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 ANKRD62A6NC57 917 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 EPOPA6NHQ4 379 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 TMCO5BA8MYB1 307 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 C2CD2LO14523 706 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 CLSTN1O94985 981 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 C1RP00736 705 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 CYP1A2P05177 515 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 H2AFZP0C0S5 128 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 HAPLN1P10915 354 aaPredicted RBP6.29□□□□□ -1.4
USP39-213ENST00000467885 ADORA2BP29275 332 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 CTNNB1P35222 781 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 SCN1AP35498 2009 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 CYLC1P35663 651 aaPredicted RBP6.29□□□□□ -1.4
USP39-213ENST00000467885 MAGEA11P43364 429 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 PDE6CP51160 858 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 ARPP19P56211 112 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 MAP3K7CLP57077 242 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 GPC5P78333 572 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 KRT83P78385 493 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 TSPY1Q01534 308 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 CENPCQ03188 943 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 SMARCB1Q12824 385 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 ZNF268Q14587 947 aaPredicted RBP6.29□□□□□ -1.4
USP39-213ENST00000467885 SPA17Q15506 151 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 MAPRE1Q15691 268 aaKnown RBP6.29□□□□□ -1.4
USP39-213ENST00000467885 RAB30Q15771 203 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 PSMD5Q16401 504 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 NFE2Q16621 373 aaPredicted RBP6.29□□□□□ -1.4
USP39-213ENST00000467885 DDR2Q16832 855 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 LRIT3Q3SXY7 679 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 CFAP221Q4G0U5 840 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 SLC39A12Q504Y0 691 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 C2CD6Q53TS8 623 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 TDRD12Q587J7 1177 aaKnown RBP6.29□□□□□ -1.4
USP39-213ENST00000467885 RAB41Q5JT25 222 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 NAA35Q5VZE5 725 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 TPGS2Q68CL5 300 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 PM20D1Q6GTS8 502 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 PDE12Q6L8Q7 609 aaKnown RBP6.29□□□□□ -1.4
USP39-213ENST00000467885 CLEC20AQ6ZU45 233 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 H2AFVQ71UI9 128 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 PHLDB2Q86SQ0 1253 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 PIGZQ86VD9 579 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 ERICH1Q86X53 443 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 PASD1Q8IV76 773 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 ACRBPQ8NEB7 543 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 KCNV2Q8TDN2 545 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 MICAL1Q8TDZ2 1067 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 SLC22A17Q8WUG5 538 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 SECISBP2LQ93073 1101 aaKnown RBP6.29□□□□□ -1.4
USP39-213ENST00000467885 C18orf8Q96DM3 657 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 MCRS1Q96EZ8 462 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 PPP1R13BQ96KQ4 1090 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 HSFY1Q96LI6 401 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 C8orf48Q96LL4 319 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 CPXM1Q96SM3 734 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 DESI2Q9BSY9 194 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 NPDC1Q9NQX5 325 aaPredicted RBP6.29□□□□□ -1.4
USP39-213ENST00000467885 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP6.29□□□□□ -1.4
USP39-213ENST00000467885 HSFX1Q9UBD0 423 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 TJP2Q9UDY2 1190 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 AFF4Q9UHB7 1163 aaKnown RBP6.29□□□□□ -1.4
USP39-213ENST00000467885 MTUS1Q9ULD2 1270 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 INTUQ9ULD6 942 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 MAFFQ9ULX9 164 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 SSX2IPQ9Y2D8 614 aa6.29□□□□□ -1.4
USP39-213ENST00000467885 ZKSCAN5Q9Y2L8 839 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms