RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 TTLL2Q9BWV7 592 aa22.58■■□□□ 1.21
HMGB3-205ENST00000455596 MMRN2Q9H8L6 949 aa22.58■■□□□ 1.21
HMGB3-205ENST00000455596 GKN1Q9NS71 199 aa22.58■■□□□ 1.21
HMGB3-205ENST00000455596 SPECC1L-ADORA2AF8WAN1 911 aa22.57■■□□□ 1.2
HMGB3-205ENST00000455596 CKMP06732 381 aa22.57■■□□□ 1.2
HMGB3-205ENST00000455596 EPB41P11171 864 aaKnown RBP22.57■■□□□ 1.2
HMGB3-205ENST00000455596 CTHP32929 405 aa22.57■■□□□ 1.2
HMGB3-205ENST00000455596 PDE6CP51160 858 aa22.57■■□□□ 1.2
HMGB3-205ENST00000455596 CACNA2D1P54289 1103 aa22.57■■□□□ 1.2
HMGB3-205ENST00000455596 USP46P62068 366 aa22.57■■□□□ 1.2
HMGB3-205ENST00000455596 TNK2Q07912 1038 aa22.57■■□□□ 1.2
HMGB3-205ENST00000455596 CC2D1AQ6P1N0 951 aaPredicted RBP22.57■■□□□ 1.2
HMGB3-205ENST00000455596 MAML2Q8IZL2 1156 aaPredicted RBP22.57■■□□□ 1.2
HMGB3-205ENST00000455596 NKD2Q969F2 451 aaPredicted RBP22.57■■□□□ 1.2
HMGB3-205ENST00000455596 CYP2S1Q96SQ9 504 aa22.57■■□□□ 1.2
HMGB3-205ENST00000455596 TMEM8AQ9HCN3 771 aa22.57■■□□□ 1.2
HMGB3-205ENST00000455596 TMEM30AQ9NV96 361 aa22.57■■□□□ 1.2
HMGB3-205ENST00000455596 TRPM5Q9NZQ8 1165 aa22.57■■□□□ 1.2
HMGB3-205ENST00000455596 FBXO4Q9UKT5 387 aa22.57■■□□□ 1.2
HMGB3-205ENST00000455596 CIZ1Q9ULV3 898 aaPredicted RBP22.57■■□□□ 1.2
HMGB3-205ENST00000455596 F5P12259 2224 aa22.57■■□□□ 1.2
HMGB3-205ENST00000455596 PFKLP17858 780 aa22.56■■□□□ 1.2
HMGB3-205ENST00000455596 GTF2H1P32780 548 aa22.56■■□□□ 1.2
HMGB3-205ENST00000455596 ASPAP45381 313 aa22.56■■□□□ 1.2
HMGB3-205ENST00000455596 PPP3CCP48454 512 aa22.56■■□□□ 1.2
HMGB3-205ENST00000455596 MCCD1P59942 119 aaPredicted RBP22.56■■□□□ 1.2
HMGB3-205ENST00000455596 ITPRIPL2Q3MIP1 535 aa22.56■■□□□ 1.2
HMGB3-205ENST00000455596 ZC3H14Q6PJT7 736 aaKnown RBP22.56■■□□□ 1.2
HMGB3-205ENST00000455596 ACOT1Q86TX2 421 aa22.56■■□□□ 1.2
HMGB3-205ENST00000455596 FAM35AQ86V20 835 aa22.56■■□□□ 1.2
HMGB3-205ENST00000455596 UNC93AQ86WB7 457 aa22.56■■□□□ 1.2
HMGB3-205ENST00000455596 ELOA2Q8IYF1 753 aaPredicted RBP22.56■■□□□ 1.2
HMGB3-205ENST00000455596 ARL14EPQ8N8R7 260 aaPredicted RBP22.56■■□□□ 1.2
HMGB3-205ENST00000455596 CCDC150Q8NCX0 1101 aa22.56■■□□□ 1.2
HMGB3-205ENST00000455596 TAS1R2Q8TE23 839 aa22.56■■□□□ 1.2
HMGB3-205ENST00000455596 EEF2KMTQ96G04 330 aa22.56■■□□□ 1.2
HMGB3-205ENST00000455596 SMARCD1Q96GM5 515 aa22.56■■□□□ 1.2
HMGB3-205ENST00000455596 SLC22A12Q96S37 553 aa22.56■■□□□ 1.2
HMGB3-205ENST00000455596 FAM83CQ9BQN1 747 aa22.56■■□□□ 1.2
HMGB3-205ENST00000455596 IER2Q9BTL4 223 aa22.56■■□□□ 1.2
HMGB3-205ENST00000455596 CHRDQ9H2X0 955 aa22.56■■□□□ 1.2
HMGB3-205ENST00000455596 LMAN1LQ9HAT1 526 aa22.56■■□□□ 1.2
HMGB3-205ENST00000455596 GCNT4Q9P109 453 aa22.56■■□□□ 1.2
HMGB3-205ENST00000455596 C2orf78A6NCI8 922 aa22.55■■□□□ 1.2
HMGB3-205ENST00000455596 PRR23AA6NEV1 266 aa22.55■■□□□ 1.2
HMGB3-205ENST00000455596 STX10O60499 249 aa22.55■■□□□ 1.2
HMGB3-205ENST00000455596 KINO60870 393 aaKnown RBP22.55■■□□□ 1.2
HMGB3-205ENST00000455596 HDCP19113 662 aa22.55■■□□□ 1.2
HMGB3-205ENST00000455596 TRIM21P19474 475 aaKnown RBP22.55■■□□□ 1.2
HMGB3-205ENST00000455596 NDST1P52848 882 aa22.55■■□□□ 1.2
HMGB3-205ENST00000455596 ZNF528Q3MIS6 628 aa22.55■■□□□ 1.2
HMGB3-205ENST00000455596 KRT39Q6A163 491 aa22.55■■□□□ 1.2
HMGB3-205ENST00000455596 SLITRK1Q96PX8 696 aa22.55■■□□□ 1.2
HMGB3-205ENST00000455596 UTP3Q9NQZ2 479 aaKnown RBP eCLIP22.55■■□□□ 1.2
HMGB3-205ENST00000455596 RTN3O95197 1032 aaPredicted RBP22.54■■□□□ 1.2
HMGB3-205ENST00000455596 CHRNB1P11230 501 aa22.54■■□□□ 1.2
HMGB3-205ENST00000455596 FKBP3Q00688 224 aaKnown RBP22.54■■□□□ 1.2
HMGB3-205ENST00000455596 USP4Q13107 963 aa22.54■■□□□ 1.2
HMGB3-205ENST00000455596 STIM1Q13586 685 aa22.54■■□□□ 1.2
HMGB3-205ENST00000455596 RUNX3Q13761 415 aa22.54■■□□□ 1.2
HMGB3-205ENST00000455596 LRRC32Q14392 662 aa22.54■■□□□ 1.2
HMGB3-205ENST00000455596 MTF1Q14872 753 aa22.54■■□□□ 1.2
HMGB3-205ENST00000455596 ANKRD40Q6AI12 368 aa22.54■■□□□ 1.2
HMGB3-205ENST00000455596 PAQR9Q6ZVX9 377 aa22.54■■□□□ 1.2
HMGB3-205ENST00000455596 ASCL5Q7RTU5 278 aa22.54■■□□□ 1.2
HMGB3-205ENST00000455596 ADSSL1Q8N142 457 aa22.54■■□□□ 1.2
HMGB3-205ENST00000455596 NUP93Q8N1F7 819 aa22.54■■□□□ 1.2
HMGB3-205ENST00000455596 CRYBG2Q8N1P7 616 aa22.54■■□□□ 1.2
HMGB3-205ENST00000455596 RIN3Q8TB24 985 aa22.54■■□□□ 1.2
HMGB3-205ENST00000455596 KCNK16Q96T55 309 aa22.54■■□□□ 1.2
HMGB3-205ENST00000455596 SEMA4AQ9H3S1 761 aa22.54■■□□□ 1.2
HMGB3-205ENST00000455596 EBF3Q9H4W6 596 aa22.54■■□□□ 1.2
HMGB3-205ENST00000455596 CYP3A43Q9HB55 503 aa22.54■■□□□ 1.2
HMGB3-205ENST00000455596 APOBEC3GQ9HC16 384 aaKnown RBP22.54■■□□□ 1.2
HMGB3-205ENST00000455596 DMAP1Q9NPF5 467 aaPredicted RBP22.54■■□□□ 1.2
HMGB3-205ENST00000455596 HMGXB4Q9UGU5 601 aa22.54■■□□□ 1.2
HMGB3-205ENST00000455596 R4GN57 208 aa22.54■■□□□ 1.2
HMGB3-205ENST00000455596 ZNF840PA6NDX5 716 aa22.53■■□□□ 1.2
HMGB3-205ENST00000455596 SLC16A3O15427 465 aaKnown RBP22.53■■□□□ 1.2
HMGB3-205ENST00000455596 CSTF1Q05048 431 aaKnown RBP22.53■■□□□ 1.2
HMGB3-205ENST00000455596 LRRC63Q05C16 580 aa22.53■■□□□ 1.2
HMGB3-205ENST00000455596 INCA1Q0VD86 236 aa22.53■■□□□ 1.2
HMGB3-205ENST00000455596 IFRD2Q12894 506 aaPredicted RBP22.53■■□□□ 1.2
HMGB3-205ENST00000455596 TAF10Q12962 218 aa22.53■■□□□ 1.2
HMGB3-205ENST00000455596 MTAPQ13126 283 aa22.53■■□□□ 1.2
HMGB3-205ENST00000455596 ORC1Q13415 861 aa22.53■■□□□ 1.2
HMGB3-205ENST00000455596 PDGFRLQ15198 375 aa22.53■■□□□ 1.2
HMGB3-205ENST00000455596 ZNF77Q15935 545 aa22.53■■□□□ 1.2
HMGB3-205ENST00000455596 TRIM68Q6AZZ1 485 aa22.53■■□□□ 1.2
HMGB3-205ENST00000455596 TXNDC11Q6PKC3 985 aa22.53■■□□□ 1.2
HMGB3-205ENST00000455596 FUKQ8N0W3 1084 aa22.53■■□□□ 1.2
HMGB3-205ENST00000455596 TTC16Q8NEE8 873 aa22.53■■□□□ 1.2
HMGB3-205ENST00000455596 NIF3L1Q9GZT8 377 aa22.53■■□□□ 1.2
HMGB3-205ENST00000455596 HPS4Q9NQG7 708 aa22.53■■□□□ 1.2
HMGB3-205ENST00000455596 KRT82Q9NSB4 513 aa22.53■■□□□ 1.2
HMGB3-205ENST00000455596 PIEZO1Q92508 2521 aa22.52■■□□□ 1.2
HMGB3-205ENST00000455596 AP1G2O75843 785 aa22.52■■□□□ 1.2
HMGB3-205ENST00000455596 ABL1P00519 1130 aa22.52■■□□□ 1.2
HMGB3-205ENST00000455596 CCDC130P13994 396 aa22.52■■□□□ 1.2
HMGB3-205ENST00000455596 TCF3P15923 654 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms