RNA–Protein interactions for RNA: ENST00000450251.5

USP53-202, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP53, Length 6,072 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-202ENST00000450251 F6X3S4 739 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 TNPO2O14787 897 aaKnown RBP2.29□□□□□ -2.04
USP53-202ENST00000450251 TAF5LO75529 589 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 HMGN1P05114 100 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 PRKACAP17612 351 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 ENDOUP21128 410 aaKnown RBP2.29□□□□□ -2.04
USP53-202ENST00000450251 FGFR2P21802 821 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 CHKAP35790 457 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 PSMC2P35998 433 aaKnown RBP2.29□□□□□ -2.04
USP53-202ENST00000450251 NUDT1P36639 197 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 SLC26A3P40879 764 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 SERPINH1P50454 418 aaKnown RBP2.29□□□□□ -2.04
USP53-202ENST00000450251 HERVK_113P62684 666 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 GPSM2P81274 684 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 UBE3AQ05086 875 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 TRAF2Q12933 501 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 LRRC14Q15048 493 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 NFIL3Q16649 462 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 PDK4Q16654 411 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 PLA2G4EQ3MJ16 856 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 ARL13BQ3SXY8 428 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 SPATS1Q496A3 300 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 MROH9Q5TGP6 573 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 IZUMO3Q5VZ72 239 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 DENND5AQ6IQ26 1287 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 FOXR2Q6PJQ5 311 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 ZNF804AQ7Z570 1209 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 METTL16Q86W50 562 aaKnown RBP2.29□□□□□ -2.04
USP53-202ENST00000450251 CHPFQ8IZ52 775 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 ZNF444Q8N0Y2 327 aaPredicted RBP2.29□□□□□ -2.04
USP53-202ENST00000450251 CARNMT1Q8N4J0 409 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 FAM13CQ8NE31 585 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 DDX54Q8TDD1 881 aaKnown RBP2.29□□□□□ -2.04
USP53-202ENST00000450251 KBTBD7Q8WVZ9 684 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 PRCCQ92733 491 aaPredicted RBP2.29□□□□□ -2.04
USP53-202ENST00000450251 OSBP2Q969R2 916 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 E2F7Q96AV8 911 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 TLCD1Q96CP7 247 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 PPP1R2P1Q96PQ5 205 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 MYL10Q9BUA6 226 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 SLC4A5Q9BY07 1137 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 PACSIN1Q9BY11 444 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 MRPL9Q9BYD2 267 aaKnown RBP2.29□□□□□ -2.04
USP53-202ENST00000450251 LRRC2Q9BYS8 371 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 SP140LQ9H930 580 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 CACYBPQ9HB71 228 aaKnown RBP2.29□□□□□ -2.04
USP53-202ENST00000450251 DYRK4Q9NR20 520 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 EMILIN3Q9NT22 766 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 ADA2Q9NZK5 511 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 DCTN4Q9UJW0 460 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 PSMD13Q9UNM6 376 aa2.29□□□□□ -2.04
USP53-202ENST00000450251 FLT4P35916 1363 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 TFECO14948 347 aaPredicted RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 SETD1AO15047 1707 aaKnown RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 SLC22A1O15245 554 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 TLR2O60603 784 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 GLRA3O75311 464 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 PRDM1O75626 825 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 LARGE1O95461 756 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 NADKO95544 446 aaPredicted RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 KRT19P08727 400 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 C7P10643 843 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 PDGFRAP16234 1089 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 IFNAR1P17181 557 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 IMPDH1P20839 514 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 FGFR4P22455 802 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 RPA1P27694 616 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 CCND2P30279 289 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 FDFT1P37268 417 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 PSMD4P55036 377 aaKnown RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 PLOD1Q02809 727 aaPredicted RBP2.28□□□□□ -2.04
USP53-202ENST00000450251 PRKCQQ04759 706 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 BTKQ06187 659 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 PRPSAP1Q14558 356 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 CALCRLQ16602 461 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 RFX4Q33E94 735 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 ZBED5Q49AG3 693 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 FAM76BQ5HYJ3 339 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 MDH1BQ5I0G3 518 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 TRIQKQ629K1 86 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 ENOSF1Q7L5Y1 443 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 FRMD5Q7Z6J6 570 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 ULK2Q8IYT8 1036 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 UBE2J2Q8N2K1 259 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 LCORLQ8N3X6 602 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 SIMC1Q8NDZ2 872 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 DPF2Q92785 391 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 TOP1MTQ969P6 601 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 SCYL1Q96KG9 808 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 KLHL32Q96NJ5 620 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 TWNKQ96RR1 684 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 KATNAL1Q9BW62 490 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 IRF2BPLQ9H1B7 796 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 VPS11Q9H270 941 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 BLZF1Q9H2G9 400 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 ZNF696Q9H7X3 374 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 COG4Q9H9E3 785 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 CPNE5Q9HCH3 593 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 TUFT1Q9NNX1 390 aa2.28□□□□□ -2.04
USP53-202ENST00000450251 SEC31BQ9NQW1 1179 aa2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms