RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 PDZD8Q8NEN9 1154 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 OR6B3Q8NGW1 331 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 OSCP1Q8WVF1 389 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 ACDQ96AP0 544 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 CCDC34Q96HJ3 373 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 TNIP3Q96KP6 325 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 C8orf48Q96LL4 319 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 SLITRK1Q96PX8 696 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 CGRRF1Q99675 332 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 P2RY13Q9BPV8 354 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 ELOVL4Q9GZR5 314 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 IKZF4Q9H2S9 585 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 EBF3Q9H4W6 596 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 ECT2Q9H8V3 914 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 TRPC7Q9HCX4 862 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 AGPAT3Q9NRZ7 376 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 COMMD8Q9NX08 183 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 ARHGAP26Q9UNA1 814 aa7.55□□□□□ -1.2
VPS41-208ENST00000448833 NCANO14594 1321 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 MYO16Q9Y6X6 1858 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 EML5Q05BV3 1969 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 A8MXQ7 604 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 K7ESF4 209 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 IKBKBO14920 756 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 TGFB1I1O43294 461 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 HRO43593 1189 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 F13A1P00488 732 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 RPN1P04843 607 aaKnown RBP7.54□□□□□ -1.2
VPS41-208ENST00000448833 PDGFRBP09619 1106 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 CCDC192P0DO97 292 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 PTPN1P18031 435 aaKnown RBP7.54□□□□□ -1.2
VPS41-208ENST00000448833 BDNFP23560 247 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 GJA4P35212 333 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 GALK1P51570 392 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 CYP2J2P51589 502 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 SPEM2Q0P670 501 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 GAS6Q14393 721 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 SGSM1Q2NKQ1 1148 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 RESP18Q5W5W9 173 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 SYT13Q7L8C5 426 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 SLC9A9Q8IVB4 645 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 ZSWIM2Q8NEG5 633 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 OR5B17Q8NGF7 314 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 TTC8Q8TAM2 541 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 NETO1Q8TDF5 533 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 SCFD1Q8WVM8 642 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 KBTBD7Q8WVZ9 684 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 GAB3Q8WWW8 586 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 OVCA2Q8WZ82 227 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 TAF4BQ92750 862 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 CD101Q93033 1021 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 CCDC127Q96BQ5 260 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 OTUB2Q96DC9 234 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 CYP2S1Q96SQ9 504 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 TTLL2Q9BWV7 592 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 SMG9Q9H0W8 520 aaKnown RBP7.54□□□□□ -1.2
VPS41-208ENST00000448833 VRTNQ9H8Y1 702 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 HPS4Q9NQG7 708 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 RBM12Q9NTZ6 932 aaKnown RBP7.54□□□□□ -1.2
VPS41-208ENST00000448833 TBC1D14Q9P2M4 693 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 RCOR1Q9UKL0 485 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 PCDHA7Q9UN72 937 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 CCL26Q9Y258 94 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 PCDHGA5Q9Y5G8 931 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 ATP6V1DQ9Y5K8 247 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 KIAA1549LQ6ZVL6 1849 aa7.54□□□□□ -1.2
VPS41-208ENST00000448833 CACNA1AO00555 2505 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 NUP205Q92621 2012 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 PDXKO00764 312 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 CLIC2O15247 247 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 ATP2C2O75185 946 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 RPP40O75818 363 aaKnown RBP7.53□□□□□ -1.2
VPS41-208ENST00000448833 RHOBTB1O94844 696 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 CLSTN1O94985 981 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 ABL1P00519 1130 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 CST3P01034 146 aaPredicted RBP7.53□□□□□ -1.2
VPS41-208ENST00000448833 CMA1P23946 247 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 LMO2P25791 158 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 HOXD13P35453 343 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 EIF2DP41214 584 aaKnown RBP7.53□□□□□ -1.2
VPS41-208ENST00000448833 GPR15P49685 360 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 ATXN1P54253 815 aaKnown RBP7.53□□□□□ -1.2
VPS41-208ENST00000448833 WNT7BP56706 349 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 CLDN10P78369 228 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 SLC7A9P82251 487 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 EHHADHQ08426 723 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 USP4Q13107 963 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 BIRC3Q13489 604 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 ELF2Q15723 593 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 ZNF77Q15935 545 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 EML3Q32P44 896 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 HSF5Q4G112 596 aaPredicted RBP7.53□□□□□ -1.2
VPS41-208ENST00000448833 ZNF667Q5HYK9 610 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 MDH1BQ5I0G3 518 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 LMBRD2Q68DH5 695 aaPredicted RBP7.53□□□□□ -1.2
VPS41-208ENST00000448833 HEATR6Q6AI08 1181 aaKnown RBP7.53□□□□□ -1.2
VPS41-208ENST00000448833 FSTL4Q6MZW2 842 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 Q6ZS52 159 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 NELFCDQ8IXH7 590 aa7.53□□□□□ -1.2
VPS41-208ENST00000448833 NUP93Q8N1F7 819 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms