RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 SIT1Q9Y3P8 196 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 CACNA1HO95180 2353 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 NCANO14594 1321 aa16.14■□□□□ 0.17
LIMS3-201ENST00000437679 TRAV19A0A0A6YYK7 116 aa16.13■□□□□ 0.17
LIMS3-201ENST00000437679 KANSL1LA0AUZ9 987 aa16.13■□□□□ 0.17
LIMS3-201ENST00000437679 GALR2O43603 387 aaPredicted RBP16.13■□□□□ 0.17
LIMS3-201ENST00000437679 AP1G2O75843 785 aa16.13■□□□□ 0.17
LIMS3-201ENST00000437679 FGFR1OPO95684 399 aaKnown RBP16.13■□□□□ 0.17
LIMS3-201ENST00000437679 GNA14O95837 355 aa16.13■□□□□ 0.17
LIMS3-201ENST00000437679 CCDC130P13994 396 aa16.13■□□□□ 0.17
LIMS3-201ENST00000437679 PPP3CCP48454 512 aa16.13■□□□□ 0.17
LIMS3-201ENST00000437679 CACNA2D1P54289 1103 aa16.13■□□□□ 0.17
LIMS3-201ENST00000437679 USP46P62068 366 aa16.13■□□□□ 0.17
LIMS3-201ENST00000437679 FCHO2Q0JRZ9 810 aa16.13■□□□□ 0.17
LIMS3-201ENST00000437679 ARHGAP29Q52LW3 1261 aa16.13■□□□□ 0.17
LIMS3-201ENST00000437679 FUKQ8N0W3 1084 aa16.13■□□□□ 0.17
LIMS3-201ENST00000437679 NUP93Q8N1F7 819 aa16.13■□□□□ 0.17
LIMS3-201ENST00000437679 PRSS33Q8NF86 280 aa16.13■□□□□ 0.17
LIMS3-201ENST00000437679 SLC2A14Q8TDB8 520 aa16.13■□□□□ 0.17
LIMS3-201ENST00000437679 DDX23Q9BUQ8 820 aaKnown RBP16.13■□□□□ 0.17
LIMS3-201ENST00000437679 TTLL2Q9BWV7 592 aa16.13■□□□□ 0.17
LIMS3-201ENST00000437679 FOXQ1Q9C009 403 aa16.13■□□□□ 0.17
LIMS3-201ENST00000437679 SMG9Q9H0W8 520 aaKnown RBP16.13■□□□□ 0.17
LIMS3-201ENST00000437679 KIF9Q9HAQ2 790 aa16.13■□□□□ 0.17
LIMS3-201ENST00000437679 KRT82Q9NSB4 513 aa16.13■□□□□ 0.17
LIMS3-201ENST00000437679 TDP1Q9NUW8 608 aa16.13■□□□□ 0.17
LIMS3-201ENST00000437679 THG1LQ9NWX6 298 aaKnown RBP16.13■□□□□ 0.17
LIMS3-201ENST00000437679 MRPS17Q9Y2R5 130 aaKnown RBP16.13■□□□□ 0.17
LIMS3-201ENST00000437679 COQ4Q9Y3A0 265 aa16.13■□□□□ 0.17
LIMS3-201ENST00000437679 TICRRQ7Z2Z1 1910 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 ANAPC1Q9H1A4 1944 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 MAN2B1O00754 1011 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 CILPO75339 1184 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 RTN3O95197 1032 aaPredicted RBP16.12■□□□□ 0.17
LIMS3-201ENST00000437679 CKMP06732 381 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 USP17L7P0C7H9 530 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 PLA2G5P39877 138 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 FMO5P49326 533 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 PDE6CP51160 858 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 PLCB2Q00722 1185 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 CETN1Q12798 172 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 IFRD2Q12894 506 aaPredicted RBP16.12■□□□□ 0.17
LIMS3-201ENST00000437679 ZNF268Q14587 947 aaPredicted RBP16.12■□□□□ 0.17
LIMS3-201ENST00000437679 UBXN2BQ14CS0 331 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 ZNF852Q6ZMS4 543 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 PAQR9Q6ZVX9 377 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 C12orf29Q8N999 325 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 PJA1Q8NG27 643 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 USP13Q92995 863 aaPredicted RBP16.12■□□□□ 0.17
LIMS3-201ENST00000437679 TATDN2Q93075 761 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 IPO9Q96P70 1041 aaKnown RBP16.12■□□□□ 0.17
LIMS3-201ENST00000437679 LRRC3BQ96PB8 259 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 SLITRK1Q96PX8 696 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 TWNKQ96RR1 684 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 KCNK16Q96T55 309 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 NELL2Q99435 816 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 SRRTQ9BXP5 876 aaKnown RBP16.12■□□□□ 0.17
LIMS3-201ENST00000437679 IRF2BPLQ9H1B7 796 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 NUP62CLQ9H1M0 184 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 FAM124BQ9H5Z6 455 aaPredicted RBP16.12■□□□□ 0.17
LIMS3-201ENST00000437679 FAM49BQ9NUQ9 324 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 TMEM30AQ9NV96 361 aa16.12■□□□□ 0.17
LIMS3-201ENST00000437679 MIA3Q5JRA6 1907 aa16.11■□□□□ 0.17
LIMS3-201ENST00000437679 DCNP07585 359 aaKnown RBP16.11■□□□□ 0.17
LIMS3-201ENST00000437679 FAM200BP0CF97 657 aa16.11■□□□□ 0.17
LIMS3-201ENST00000437679 GLULP15104 373 aa16.11■□□□□ 0.17
LIMS3-201ENST00000437679 PFKLP17858 780 aa16.11■□□□□ 0.17
LIMS3-201ENST00000437679 YWHAQP27348 245 aa16.11■□□□□ 0.17
LIMS3-201ENST00000437679 ADORA2BP29275 332 aa16.11■□□□□ 0.17
LIMS3-201ENST00000437679 TAF10Q12962 218 aa16.11■□□□□ 0.17
LIMS3-201ENST00000437679 CC2D1AQ6P1N0 951 aaPredicted RBP16.11■□□□□ 0.17
LIMS3-201ENST00000437679 CCDC105Q8IYK2 499 aa16.11■□□□□ 0.17
LIMS3-201ENST00000437679 MLKLQ8NB16 471 aa16.11■□□□□ 0.17
LIMS3-201ENST00000437679 DTWD2Q8NBA8 298 aa16.11■□□□□ 0.17
LIMS3-201ENST00000437679 CYFIP2Q96F07 1278 aa16.11■□□□□ 0.17
LIMS3-201ENST00000437679 HNRNPABQ99729 332 aaKnown RBP16.11■□□□□ 0.17
LIMS3-201ENST00000437679 OSBPL6Q9BZF3 934 aa16.11■□□□□ 0.17
LIMS3-201ENST00000437679 LTB4R2Q9NPC1 389 aa16.11■□□□□ 0.17
LIMS3-201ENST00000437679 CISHQ9NSE2 258 aa16.11■□□□□ 0.17
LIMS3-201ENST00000437679 LMBRD1Q9NUN5 540 aa16.11■□□□□ 0.17
LIMS3-201ENST00000437679 RWDD2AQ9UIY3 292 aa16.11■□□□□ 0.17
LIMS3-201ENST00000437679 CCL26Q9Y258 94 aa16.11■□□□□ 0.17
LIMS3-201ENST00000437679 PIAS3Q9Y6X2 628 aa16.11■□□□□ 0.17
LIMS3-201ENST00000437679 WDFY4Q6ZS81 3184 aa16.1■□□□□ 0.17
LIMS3-201ENST00000437679 FAM170BA6NMN3 283 aa16.1■□□□□ 0.17
LIMS3-201ENST00000437679 GOLGA6L22H0YM25 854 aa16.1■□□□□ 0.17
LIMS3-201ENST00000437679 ARNTLO00327 626 aa16.1■□□□□ 0.17
LIMS3-201ENST00000437679 PMM2O15305 246 aa16.1■□□□□ 0.17
LIMS3-201ENST00000437679 NCAM2O15394 837 aa16.1■□□□□ 0.17
LIMS3-201ENST00000437679 ABL1P00519 1130 aa16.1■□□□□ 0.17
LIMS3-201ENST00000437679 CCDC192P0DO97 292 aa16.1■□□□□ 0.17
LIMS3-201ENST00000437679 HDCP19113 662 aa16.1■□□□□ 0.17
LIMS3-201ENST00000437679 CD72P21854 359 aa16.1■□□□□ 0.17
LIMS3-201ENST00000437679 KPNA1P52294 538 aaPredicted RBP16.1■□□□□ 0.17
LIMS3-201ENST00000437679 MAP3K7CLP57077 242 aa16.1■□□□□ 0.17
LIMS3-201ENST00000437679 YWHAEP62258 255 aaKnown RBP16.1■□□□□ 0.17
LIMS3-201ENST00000437679 TCF15Q12870 199 aa16.1■□□□□ 0.17
LIMS3-201ENST00000437679 ZNF394Q53GI3 561 aa16.1■□□□□ 0.17
LIMS3-201ENST00000437679 ARL14EPQ8N8R7 260 aaPredicted RBP16.1■□□□□ 0.17
LIMS3-201ENST00000437679 PDZD8Q8NEN9 1154 aa16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms