RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 CCND1P24385 295 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 ALDH3A1P30838 453 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 MMRN1Q13201 1228 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 SEPT7Q16181 437 aaKnown RBP12.36□□□□□ -0.43
CD44-209ENST00000433892 SH3D19Q5HYK7 790 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 SH3PXD2AQ5TCZ1 1133 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 TLDC1Q6P9B6 456 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 ZNF449Q6P9G9 518 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 NPNTQ6UXI9 565 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 PDIK1LQ8N165 341 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 C1orf127Q8N9H9 656 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 SLC4A11Q8NBS3 891 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.36□□□□□ -0.43
CD44-209ENST00000433892 SPATA18Q8TC71 538 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 TCP10LQ8TDR4 215 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 C10orf82Q8WW14 230 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 FRMD8P1Q9BZ68 369 aaPredicted RBP12.36□□□□□ -0.43
CD44-209ENST00000433892 SPATC1LQ9H0A9 340 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 C2orf40Q9H1Z8 148 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 RPF1Q9H9Y2 349 aaKnown RBP12.36□□□□□ -0.43
CD44-209ENST00000433892 ALG13Q9NP73 1137 aaKnown RBP12.36□□□□□ -0.43
CD44-209ENST00000433892 NPHS2Q9NP85 383 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 USP18Q9UMW8 372 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 CHMP2BQ9UQN3 213 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 SSC5DA1L4H1 1573 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 IGKV6-21A0A0C4DH24 114 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 E7ESA3 106 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 APOC4-APOC2K7ER74 178 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 MCF2LO15068 1137 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 DCTN3O75935 186 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 RNF8O76064 485 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 MICAL2O94851 1124 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 APOC2P02655 101 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 ITGB3P05106 788 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 CLCN3P51790 818 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 ATP11AP98196 1134 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 PTPN11Q06124 597 aaPredicted RBP12.36□□□□□ -0.43
CD44-209ENST00000433892 VGLL4Q14135 290 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 KLHL38Q2WGJ6 581 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 ZC3H18Q86VM9 953 aaKnown RBP12.36□□□□□ -0.43
CD44-209ENST00000433892 IGDCC3Q8IVU1 814 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 CMASQ8NFW8 434 aaPredicted RBP12.36□□□□□ -0.43
CD44-209ENST00000433892 SLC16A10Q8TF71 515 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 MZB1Q8WU39 189 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 DCAKDQ8WVC6 231 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 DHRS4Q9BTZ2 278 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 BCO2Q9BYV7 579 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 ELOVL4Q9GZR5 314 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 CDT1Q9H211 546 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 FZD8Q9H461 694 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 NOP53Q9NZM5 478 aaKnown RBP12.36□□□□□ -0.43
CD44-209ENST00000433892 SLC17A7Q9P2U7 560 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 C15orf41Q9Y2V0 281 aa12.36□□□□□ -0.43
CD44-209ENST00000433892 M0QYV0 167 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 USP2O75604 605 aaPredicted RBP12.35□□□□□ -0.43
CD44-209ENST00000433892 CBX6O95503 412 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 TRUB2O95900 331 aaKnown RBP12.35□□□□□ -0.43
CD44-209ENST00000433892 T-ENOLP0DO92 83 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 DPYSL3Q14195 570 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 RAB6CQ53S08 254 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 PLEKHG4Q58EX7 1191 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 NOL9Q5SY16 702 aaKnown RBP12.35□□□□□ -0.43
CD44-209ENST00000433892 FAM102AQ5T9C2 384 aaPredicted RBP12.35□□□□□ -0.43
CD44-209ENST00000433892 UBA3Q8TBC4 463 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 RAB3IPQ96QF0 476 aaPredicted RBP12.35□□□□□ -0.43
CD44-209ENST00000433892 PEBP4Q96S96 227 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 RAB6CQ9H0N0 254 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 LRMDAQ9H2I8 198 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 WDR35Q9P2L0 1181 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 FETUBQ9UGM5 382 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 LACTBL1A8MY62 500 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 GPR25O00155 361 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 GAS2O43903 313 aaKnown RBP12.35□□□□□ -0.43
CD44-209ENST00000433892 DIAPH2O60879 1101 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 ELK3P41970 407 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 OVGP1Q12889 678 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 EFCAB12Q6NXP0 572 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 DARS2Q6PI48 645 aaKnown RBP12.35□□□□□ -0.43
CD44-209ENST00000433892 ZNF276Q8N554 614 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 BANPQ8N9N5 519 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 TMEM176AQ96HP8 235 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 SPATA33Q96N06 139 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 PPP1R16BQ96T49 567 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 ADPGKQ9BRR6 497 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 PHACTR1Q9C0D0 580 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 SSU72Q9NP77 194 aaKnown RBP12.35□□□□□ -0.43
CD44-209ENST00000433892 CYLDQ9NQC7 956 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.35□□□□□ -0.43
CD44-209ENST00000433892 DCTN4Q9UJW0 460 aa12.35□□□□□ -0.43
CD44-209ENST00000433892 MGAMO43451 1857 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 LOC285556D6RIA3 1793 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 AVILO75366 819 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 ATP5HO75947 161 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 CDH6P55285 790 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 RNASELQ05823 741 aaKnown RBP12.34□□□□□ -0.43
CD44-209ENST00000433892 MBTD1Q05BQ5 628 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 TAF1BQ53T94 588 aaPredicted RBP12.34□□□□□ -0.43
CD44-209ENST00000433892 CELF3Q5SZQ8 465 aaKnown RBP12.34□□□□□ -0.43
CD44-209ENST00000433892 JADE1Q6IE81 842 aa12.34□□□□□ -0.43
CD44-209ENST00000433892 GADL1Q6ZQY3 521 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms