RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 KRT40Q6A162 431 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 STK32CQ86UX6 486 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 CLASRPQ8N2M8 674 aaKnown RBP4.72□□□□□ -1.65
HMGB3-203ENST00000430118 REPS2Q8NFH8 660 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 NUDT10Q8NFP7 164 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 SPPL3Q8TCT6 385 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 IP6K1Q92551 441 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 RABGGTAQ92696 567 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 NUDT11Q96G61 164 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 SNX27Q96L92 541 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 MOGAT1Q96PD6 335 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 NDC1Q9BTX1 674 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 TMEM168Q9H0V1 697 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 KCNH6Q9H252 994 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 CHST8Q9H2A9 424 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 OBP2BQ9NPH6 170 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 RRN3Q9NYV6 651 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 GRHPRQ9UBQ7 328 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 SLC13A4Q9UKG4 626 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 FAM184BQ9ULE4 1060 aa4.72□□□□□ -1.65
HMGB3-203ENST00000430118 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.72□□□□□ -1.65
HMGB3-203ENST00000430118 BRCA1P38398 1863 aaKnown RBP4.72□□□□□ -1.65
HMGB3-203ENST00000430118 CD163L1Q9NR16 1453 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 PRSS29PA6NIE9 313 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 J3KRW8 73 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 MYO1CO00159 1063 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 CA12O43570 354 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 GLP2RO95838 553 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 A1BGP04217 495 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 RAP2AP10114 183 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 GABRB3P28472 473 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 VIPR2P41587 438 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 SLC11A2P49281 568 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 AMPHP49418 695 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 NCKAP1LP55160 1127 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 GEMIN4P57678 1058 aaKnown RBP4.71□□□□□ -1.66
HMGB3-203ENST00000430118 NOMO3P69849 1222 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 CTBP1Q13363 440 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 ZNF568Q3ZCX4 644 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 AMOTQ4VCS5 1084 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 UNC13DQ70J99 1090 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 DOK3Q7L591 496 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.71□□□□□ -1.66
HMGB3-203ENST00000430118 ADGRG2Q8IZP9 1017 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 ATG16L2Q8NAA4 619 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 OR5M3Q8NGP4 307 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 MDM1Q8TC05 714 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 RSC1A1Q92681 617 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 SPSB4Q96A44 273 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 KRTAP4-12Q9BQ66 201 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 SYT3Q9BQG1 590 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 MRI1Q9BV20 369 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 KATNAL1Q9BW62 490 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 FAM83DQ9H4H8 585 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 XPNPEP3Q9NQH7 507 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 TMOD3Q9NYL9 352 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 RGL1Q9NZL6 768 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 NTMQ9P121 344 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 LRFN1Q9P244 771 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 SLC23A1Q9UHI7 598 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 CLCA2Q9UQC9 943 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 KDM6AO15550 1401 aaPredicted RBP4.71□□□□□ -1.66
HMGB3-203ENST00000430118 ITIH6Q6UXX5 1313 aa4.71□□□□□ -1.66
HMGB3-203ENST00000430118 SH3D21A4FU49 640 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 ZNF503-AS2A6NEH8 195 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 CXorf49A8MYA2 514 aaPredicted RBP4.7□□□□□ -1.66
HMGB3-203ENST00000430118 DNAJB5O75953 348 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 SASH1O94885 1247 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 AGR2O95994 175 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 GRPP07492 148 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 FAM163BP0C2L3 166 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 HSPA8P11142 646 aaKnown RBP4.7□□□□□ -1.66
HMGB3-203ENST00000430118 ITGA8P53708 1063 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 EIF5P55010 431 aaKnown RBP4.7□□□□□ -1.66
HMGB3-203ENST00000430118 NPEPPSP55786 919 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 POSTNQ15063 836 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 TAF12Q16514 161 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 TRIM71Q2Q1W2 868 aaKnown RBP4.7□□□□□ -1.66
HMGB3-203ENST00000430118 SLC4A8Q2Y0W8 1093 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 MFSD14BQ5SR56 506 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 LCE3BQ5TA77 95 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 BORAQ6PGQ7 559 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 GATAD2AQ86YP4 633 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 ZDHHC14Q8IZN3 488 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 ANKRD53Q8N9V6 530 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 STT3BQ8TCJ2 826 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 SMCR8Q8TEV9 937 aaPredicted RBP4.7□□□□□ -1.66
HMGB3-203ENST00000430118 COG3Q96JB2 828 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 SIGLEC10Q96LC7 697 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 SPATA5L1Q9BVQ7 753 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 KIAA1683Q9H0B3 1180 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 SAYSD1Q9NPB0 183 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 IL23AQ9NPF7 189 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 HEYLQ9NQ87 328 aaPredicted RBP4.7□□□□□ -1.66
HMGB3-203ENST00000430118 RUVBL1Q9Y265 456 aaKnown RBP4.7□□□□□ -1.66
HMGB3-203ENST00000430118 TMX2Q9Y320 296 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 SLC4A7Q9Y6M7 1214 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 MAP3K19Q56UN5 1328 aa4.7□□□□□ -1.66
HMGB3-203ENST00000430118 FAM234BA2RU67 622 aa4.69□□□□□ -1.66
HMGB3-203ENST00000430118 UNC5CO95185 931 aa4.69□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms