RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 PLA2G12BQ9BX93 195 aa15.96■□□□□ 0.14
PTPRF-206ENST00000429895 IARS2Q9NSE4 1012 aaKnown RBP15.96■□□□□ 0.14
PTPRF-206ENST00000429895 MTO1Q9Y2Z2 717 aaKnown RBP15.96■□□□□ 0.14
PTPRF-206ENST00000429895 CDY2AQ9Y6F7 541 aa15.96■□□□□ 0.14
PTPRF-206ENST00000429895 CDY1Q9Y6F8 540 aa15.96■□□□□ 0.14
PTPRF-206ENST00000429895 ARHGEF40Q8TER5 1519 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 SYNCRIPO60506 623 aaKnown RBP15.95■□□□□ 0.14
PTPRF-206ENST00000429895 NUDT2P50583 147 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 BBS2Q9BXC9 721 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 THAP2Q9H0W7 228 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 CCDC134Q9H6E4 229 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 AGRPO00253 132 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 RPA1P27694 616 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 SERPINB5P36952 375 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 COILP38432 576 aaPredicted RBP15.95■□□□□ 0.14
PTPRF-206ENST00000429895 CASP4P49662 377 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 GEMIN4P57678 1058 aaKnown RBP15.95■□□□□ 0.14
PTPRF-206ENST00000429895 CENPCQ03188 943 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 CYP51A1Q16850 503 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 RIN2Q8WYP3 895 aaPredicted RBP15.95■□□□□ 0.14
PTPRF-206ENST00000429895 XPO6Q96QU8 1125 aaKnown RBP15.95■□□□□ 0.14
PTPRF-206ENST00000429895 ANKEF1Q9NU02 776 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 MTSS1O43312 755 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 OVGP1Q12889 678 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 CAPRIN2Q6IMN6 1127 aaKnown RBP15.95■□□□□ 0.14
PTPRF-206ENST00000429895 POTEAQ6S8J7 498 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 ZNF677Q86XU0 584 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 CNTNAP5Q8WYK1 1306 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 SLC12A8A0AV02 714 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 CASTOR2A6NHX0 329 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 MSH4O15457 936 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 PCDH8O95206 1070 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 UBTFL6P0CB48 400 aaPredicted RBP15.95■□□□□ 0.14
PTPRF-206ENST00000429895 HPGDP15428 266 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 EDRF1Q3B7T1 1238 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 ACAD10Q6JQN1 1059 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 EFL1Q7Z2Z2 1120 aaKnown RBP15.95■□□□□ 0.14
PTPRF-206ENST00000429895 RD3Q7Z3Z2 195 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 KIRREL3Q8IZU9 778 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 CNBD2Q96M20 576 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 NDEL1Q9GZM8 345 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 CPA4Q9UI42 421 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 TUBE1Q9UJT0 475 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 H0YC42 278 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 SPAG6O75602 509 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 CKBP12277 381 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 VCLP18206 1134 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 STYK1Q6J9G0 422 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 APOL2Q9BQE5 337 aa15.95■□□□□ 0.14
PTPRF-206ENST00000429895 ZNF284Q2VY69 593 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 AGAP9Q5VTM2 703 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 MRNIPQ6NTE8 343 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 GPRASP2Q96D09 838 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 CCT8L2Q96SF2 557 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 IMPAD1Q9NX62 359 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 IPPQ9Y573 584 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 RPS6KL1Q9Y6S9 549 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 M0R3G1 203 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 SLC37A4O43826 429 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 TOMM70O94826 608 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 NR1I3Q14994 352 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 BARGINQ6ZT62 677 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 IFNLR1Q8IU57 520 aaPredicted RBP15.94■□□□□ 0.14
PTPRF-206ENST00000429895 DYRK1BQ9Y463 629 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 EGFRP00533 1210 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 TFE3P19532 575 aaPredicted RBP15.94■□□□□ 0.14
PTPRF-206ENST00000429895 GUCA1AP43080 201 aaPredicted RBP15.94■□□□□ 0.14
PTPRF-206ENST00000429895 EZH2Q15910 746 aaKnown RBP15.94■□□□□ 0.14
PTPRF-206ENST00000429895 SGSM3Q96HU1 749 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 JCADQ9P266 1359 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 TRPC5OSA6NMA1 111 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 NFIBO00712 420 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 KCNA3P22001 575 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 FDFT1P37268 417 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 DENND1BQ6P3S1 775 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 UNC45BQ8IWX7 931 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 SEC16BQ96JE7 1060 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 FAM111AQ96PZ2 611 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 GEMIN8Q9NWZ8 242 aaKnown RBP15.94■□□□□ 0.14
PTPRF-206ENST00000429895 STRNO43815 780 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 CYP7B1O75881 506 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 ZNF286BP0CG31 522 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 RHOAP61586 193 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 VPS72Q15906 364 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 RASGRP2Q7LDG7 609 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 ZNF438Q7Z4V0 828 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 B3GALNT2Q8NCR0 500 aa15.94■□□□□ 0.14
PTPRF-206ENST00000429895 CBX4O00257 560 aa15.93■□□□□ 0.14
PTPRF-206ENST00000429895 EIF2B5Q13144 721 aaKnown RBP15.93■□□□□ 0.14
PTPRF-206ENST00000429895 MICU2Q8IYU8 434 aa15.93■□□□□ 0.14
PTPRF-206ENST00000429895 CENPLQ8N0S6 344 aaPredicted RBP15.93■□□□□ 0.14
PTPRF-206ENST00000429895 MYO1HQ8N1T3 1032 aa15.93■□□□□ 0.14
PTPRF-206ENST00000429895 AGGF1Q8N302 714 aaeCLIP15.93■□□□□ 0.14
PTPRF-206ENST00000429895 FICDQ9BVA6 458 aa15.93■□□□□ 0.14
PTPRF-206ENST00000429895 KRT84Q9NSB2 600 aa15.93■□□□□ 0.14
PTPRF-206ENST00000429895 PRDM15P57071 1507 aaPredicted RBP15.93■□□□□ 0.14
PTPRF-206ENST00000429895 ICAM1P05362 532 aa15.93■□□□□ 0.14
PTPRF-206ENST00000429895 RHOCP08134 193 aa15.93■□□□□ 0.14
PTPRF-206ENST00000429895 RPS12P25398 132 aaKnown RBP15.93■□□□□ 0.14
PTPRF-206ENST00000429895 KCNB2Q92953 911 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms