RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 FTLP02792 175 aaPredicted RBP10.65□□□□□ -0.7
CD44-207ENST00000425428 PLEKP08567 350 aaPredicted RBP10.65□□□□□ -0.7
CD44-207ENST00000425428 CSH1P0DML2 217 aa10.65□□□□□ -0.7
CD44-207ENST00000425428 CSH2P0DML3 217 aa10.65□□□□□ -0.7
CD44-207ENST00000425428 HAPLN1P10915 354 aaPredicted RBP10.65□□□□□ -0.7
CD44-207ENST00000425428 IGFBP4P22692 258 aa10.65□□□□□ -0.7
CD44-207ENST00000425428 SSTR3P32745 418 aaPredicted RBP10.65□□□□□ -0.7
CD44-207ENST00000425428 PLA2G4AP47712 749 aa10.65□□□□□ -0.7
CD44-207ENST00000425428 NAP1L1P55209 391 aaKnown RBP10.65□□□□□ -0.7
CD44-207ENST00000425428 GFPT1Q06210 699 aaPredicted RBP10.65□□□□□ -0.7
CD44-207ENST00000425428 PDE4CQ08493 712 aa10.65□□□□□ -0.7
CD44-207ENST00000425428 KIF5AQ12840 1032 aa10.65□□□□□ -0.7
CD44-207ENST00000425428 IFI16Q16666 785 aaKnown RBP10.65□□□□□ -0.7
CD44-207ENST00000425428 DENND1BQ6P3S1 775 aa10.65□□□□□ -0.7
CD44-207ENST00000425428 TOGARAM2Q6ZUX3 1019 aa10.65□□□□□ -0.7
CD44-207ENST00000425428 RBM23Q86U06 439 aaKnown RBP10.65□□□□□ -0.7
CD44-207ENST00000425428 LRRTM3Q86VH5 581 aa10.65□□□□□ -0.7
CD44-207ENST00000425428 TCEAL8Q8IYN2 117 aa10.65□□□□□ -0.7
CD44-207ENST00000425428 NUP93Q8N1F7 819 aa10.65□□□□□ -0.7
CD44-207ENST00000425428 C1orf131Q8NDD1 294 aaKnown RBP10.65□□□□□ -0.7
CD44-207ENST00000425428 CPA5Q8WXQ8 436 aa10.65□□□□□ -0.7
CD44-207ENST00000425428 DDX1Q92499 740 aaKnown RBP10.65□□□□□ -0.7
CD44-207ENST00000425428 CASP10Q92851 521 aa10.65□□□□□ -0.7
CD44-207ENST00000425428 ZNF512Q96ME7 567 aaPredicted RBP10.65□□□□□ -0.7
CD44-207ENST00000425428 GCNAQ96QF7 691 aa10.65□□□□□ -0.7
CD44-207ENST00000425428 DZANK1Q9NVP4 752 aa10.65□□□□□ -0.7
CD44-207ENST00000425428 NAGPAQ9UK23 515 aa10.65□□□□□ -0.7
CD44-207ENST00000425428 INTUQ9ULD6 942 aa10.65□□□□□ -0.7
CD44-207ENST00000425428 SLC27A5Q9Y2P5 690 aa10.65□□□□□ -0.7
CD44-207ENST00000425428 SCINQ9Y6U3 715 aa10.65□□□□□ -0.7
CD44-207ENST00000425428 GOLGA6L9A6NEM1 432 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 HIDE1A8MVS5 230 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 F8VP50 259 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 ARHGEF15O94989 841 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 FGF19O95750 216 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 CYP1A1P04798 512 aaPredicted RBP10.65□□□□□ -0.71
CD44-207ENST00000425428 FECHP22830 423 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 DNAJB1P25685 340 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 CDH5P33151 784 aaPredicted RBP10.65□□□□□ -0.71
CD44-207ENST00000425428 GPD2P43304 727 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 NOMO3P69849 1222 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 CENPCQ03188 943 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 PDCLQ13371 301 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 E4F1Q66K89 784 aaPredicted RBP10.65□□□□□ -0.71
CD44-207ENST00000425428 GPR153Q6NV75 609 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 CLEC20AQ6ZU45 233 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 DENND5BQ6ZUT9 1274 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 ARHGAP18Q8N392 663 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 KCTD13Q8WZ19 329 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 SPATA17Q96L03 361 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 CALR3Q96L12 384 aaKnown RBP10.65□□□□□ -0.71
CD44-207ENST00000425428 SLITRK1Q96PX8 696 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 PKMYT1Q99640 499 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 SELENOOQ9BVL4 669 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 PIDD1Q9HB75 910 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 SPTLC3Q9NUV7 552 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 TMLHEQ9NVH6 421 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 LCMT1Q9UIC8 334 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 NME7Q9Y5B8 376 aa10.65□□□□□ -0.71
CD44-207ENST00000425428 TRIOBPQ9H2D6 2365 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 A0A087X0T9 212 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 DDX3XO00571 662 aaKnown RBP eCLIP10.64□□□□□ -0.71
CD44-207ENST00000425428 KRT86O43790 486 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 CLASP2O75122 1294 aaKnown RBP10.64□□□□□ -0.71
CD44-207ENST00000425428 CALCAP01258 141 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 C8AP07357 584 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 FAM228BP0C875 321 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 LCP1P13796 627 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 CHRNB2P17787 502 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 MSNP26038 577 aaKnown RBP10.64□□□□□ -0.71
CD44-207ENST00000425428 IRS1P35568 1242 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 NRIP1P48552 1158 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 CLCN4P51793 760 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 GPC5P78333 572 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 IFRD2Q12894 506 aaPredicted RBP10.64□□□□□ -0.71
CD44-207ENST00000425428 PABPC1LQ4VXU2 614 aaKnown RBP10.64□□□□□ -0.71
CD44-207ENST00000425428 ARHGAP29Q52LW3 1261 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 OR6B2Q6IFH4 312 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 DCUN1D2Q6PH85 259 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 RSPO2Q6UXX9 243 aaPredicted RBP10.64□□□□□ -0.71
CD44-207ENST00000425428 TADA2BQ86TJ2 420 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 PIGZQ86VD9 579 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 TTC30AQ86WT1 665 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 PHF13Q86YI8 300 aaPredicted RBP10.64□□□□□ -0.71
CD44-207ENST00000425428 PDZD8Q8NEN9 1154 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 SLC7A14Q8TBB6 771 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 SLC35F5Q8WV83 523 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 ZNF653Q96CK0 615 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 LPIN3Q9BQK8 851 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 PRDM12Q9H4Q4 367 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 IGFLR1Q9H665 355 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 CSNK1G1Q9HCP0 422 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 CNGB3Q9NQW8 809 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 MAN1C1Q9NR34 630 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 PARVAQ9NVD7 372 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 FBXW11Q9UKB1 542 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 PCDHA13Q9Y5I0 950 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 INSL5Q9Y5Q6 135 aa10.64□□□□□ -0.71
CD44-207ENST00000425428 COL4A4P53420 1690 aaPredicted RBP10.63□□□□□ -0.71
CD44-207ENST00000425428 CAPN9O14815 690 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms