RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 SLC17A6Q9P2U8 582 aa12.51□□□□□ -0.41
PTPRN-204ENST00000423636 PSTPIP1O43586 416 aa12.51□□□□□ -0.41
PTPRN-204ENST00000423636 CILPO75339 1184 aa12.51□□□□□ -0.41
PTPRN-204ENST00000423636 RNF8O76064 485 aa12.51□□□□□ -0.41
PTPRN-204ENST00000423636 RECQL4O94761 1208 aa12.51□□□□□ -0.41
PTPRN-204ENST00000423636 HMGCRP04035 888 aa12.51□□□□□ -0.41
PTPRN-204ENST00000423636 KDELR1P24390 212 aa12.51□□□□□ -0.41
PTPRN-204ENST00000423636 GPD2P43304 727 aa12.51□□□□□ -0.41
PTPRN-204ENST00000423636 NDUFV1P49821 464 aa12.51□□□□□ -0.41
PTPRN-204ENST00000423636 CNGA2Q16280 664 aa12.51□□□□□ -0.41
PTPRN-204ENST00000423636 C6orf118Q5T5N4 469 aa12.51□□□□□ -0.41
PTPRN-204ENST00000423636 AGBL2Q5U5Z8 902 aa12.51□□□□□ -0.41
PTPRN-204ENST00000423636 OLFML2BQ68BL8 750 aa12.51□□□□□ -0.41
PTPRN-204ENST00000423636 VSTM1Q6UX27 236 aa12.51□□□□□ -0.41
PTPRN-204ENST00000423636 CCDC121Q6ZUS5 278 aa12.51□□□□□ -0.41
PTPRN-204ENST00000423636 UBR7Q8N806 425 aa12.51□□□□□ -0.41
PTPRN-204ENST00000423636 C3orf20Q8ND61 904 aa12.51□□□□□ -0.41
PTPRN-204ENST00000423636 CCDC110Q8TBZ0 833 aa12.51□□□□□ -0.41
PTPRN-204ENST00000423636 FBXO41Q8TF61 875 aa12.51□□□□□ -0.41
PTPRN-204ENST00000423636 ATXN2LQ8WWM7 1075 aaKnown RBP12.51□□□□□ -0.41
PTPRN-204ENST00000423636 MAML3Q96JK9 1138 aa12.51□□□□□ -0.41
PTPRN-204ENST00000423636 MAK16Q9BXY0 300 aaKnown RBP12.51□□□□□ -0.41
PTPRN-204ENST00000423636 MROH8Q9H579 483 aa12.51□□□□□ -0.41
PTPRN-204ENST00000423636 TTC3P53804 2025 aa12.51□□□□□ -0.41
PTPRN-204ENST00000423636 ASB14A6NK59 587 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 GABBR2O75899 941 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 TMEM63AO94886 807 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 KLRC2P26717 231 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 HOXA11P31270 313 aaPredicted RBP12.5□□□□□ -0.41
PTPRN-204ENST00000423636 RPL22P35268 128 aaKnown RBP12.5□□□□□ -0.41
PTPRN-204ENST00000423636 CETN2P41208 172 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 GRIA1P42261 906 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 YWHAEP62258 255 aaKnown RBP12.5□□□□□ -0.41
PTPRN-204ENST00000423636 TNFAIP2Q03169 654 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 ACTN3Q08043 901 aaPredicted RBP12.5□□□□□ -0.41
PTPRN-204ENST00000423636 OVGP1Q12889 678 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 LAMC2Q13753 1193 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 KRT81Q14533 505 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 ZNF792Q3KQV3 632 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 ERMARDQ5T6L9 678 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 FAM131BQ86XD5 332 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 RCOR2Q8IZ40 523 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.5□□□□□ -0.41
PTPRN-204ENST00000423636 TMEM174Q8WUU8 243 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 PRMT7Q9NVM4 692 aaPredicted RBP12.5□□□□□ -0.41
PTPRN-204ENST00000423636 PNMA3Q9UL41 463 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 OTOFQ9HC10 1997 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 B4GALT4O60513 344 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 TOP3BO95985 862 aaKnown RBP12.5□□□□□ -0.41
PTPRN-204ENST00000423636 PGK1P00558 417 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 MMP3P08254 477 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 NUDT17P0C025 328 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 FGFR1P11362 822 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 STX2P32856 288 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 SLC25A11Q02978 314 aaKnown RBP12.5□□□□□ -0.41
PTPRN-204ENST00000423636 SOX4Q06945 474 aaPredicted RBP12.5□□□□□ -0.41
PTPRN-204ENST00000423636 PPP2R5EQ16537 467 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 TTC31Q49AM3 519 aaPredicted RBP12.5□□□□□ -0.41
PTPRN-204ENST00000423636 GKAP1Q5VSY0 366 aaPredicted RBP12.5□□□□□ -0.41
PTPRN-204ENST00000423636 MICALCLQ6ZW33 695 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 MORC4Q8TE76 937 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 FAM172AQ8WUF8 416 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 FAM81BQ96LP2 452 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 TINF2Q9BSI4 451 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 DHX35Q9H5Z1 703 aaKnown RBP12.5□□□□□ -0.41
PTPRN-204ENST00000423636 SEPT10Q9P0V9 454 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 TCRBV5S1A1TA0A578 114 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 DRG2P55039 364 aaKnown RBP12.5□□□□□ -0.41
PTPRN-204ENST00000423636 TRIM72Q6ZMU5 477 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 UNC5BQ8IZJ1 945 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 ARRDC4Q8NCT1 418 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 ZIC5Q96T25 663 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.5□□□□□ -0.41
PTPRN-204ENST00000423636 SLC5A4Q9NY91 659 aa12.5□□□□□ -0.41
PTPRN-204ENST00000423636 MYADML2A6NDP7 307 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 C2orf71A6NGG8 1288 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 KCNN4O15554 427 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 MAGEA9P43362 315 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 MMP13P45452 471 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 EIF3BP55884 814 aaKnown RBP12.49□□□□□ -0.41
PTPRN-204ENST00000423636 NME3Q13232 169 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 C3orf62Q6ZUJ4 267 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 CTAGE3PQ8IX95 158 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 FBXO36Q8NEA4 188 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 GRK7Q8WTQ7 553 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 PAAF1Q9BRP4 392 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 FAM129AQ9BZQ8 928 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 WHRNQ9P202 907 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.49□□□□□ -0.41
PTPRN-204ENST00000423636 BEST1O76090 585 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 PFKMP08237 780 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 SMIM10L2AP0DMW4 78 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 SMIM10L2BP0DMW5 78 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 GTF2A2P52657 109 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 VCPP55072 806 aaKnown RBP12.49□□□□□ -0.41
PTPRN-204ENST00000423636 YWHAGP61981 247 aaKnown RBP eCLIP12.49□□□□□ -0.41
PTPRN-204ENST00000423636 HACE1Q8IYU2 909 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 RBM41Q96IZ5 413 aaKnown RBP12.49□□□□□ -0.41
PTPRN-204ENST00000423636 ETNK2Q9NVF9 386 aa12.49□□□□□ -0.41
PTPRN-204ENST00000423636 TMEM51Q9NW97 253 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms