RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 TTC8Q8TAM2 541 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 ACTL9Q8TC94 416 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 NSUN6Q8TEA1 469 aaKnown RBP11.52□□□□□ -0.57
LIMS1-207ENST00000422797 YIPF3Q9GZM5 350 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 PORCNQ9H237 461 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 VPS33BQ9H267 617 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 VCX3BQ9H321 246 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 RSAD1Q9HA92 442 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 ARL8BQ9NVJ2 186 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 CPSF2Q9P2I0 782 aaKnown RBP11.52□□□□□ -0.57
LIMS1-207ENST00000422797 KANSL3Q9P2N6 904 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 SLC9A2Q9UBY0 812 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 XPO7Q9UIA9 1087 aaKnown RBP11.52□□□□□ -0.57
LIMS1-207ENST00000422797 NUB1Q9Y5A7 615 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 CNTNAP2Q9UHC6 1331 aa11.52□□□□□ -0.57
LIMS1-207ENST00000422797 DPPA5A6NC42 116 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 F8VP50 259 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 COPEO14579 308 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 BIRC5O15392 142 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 FKBP6O75344 327 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 SKAP2O75563 359 aaPredicted RBP11.51□□□□□ -0.57
LIMS1-207ENST00000422797 TOMM70O94826 608 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 SNUPNO95149 360 aaKnown RBP11.51□□□□□ -0.57
LIMS1-207ENST00000422797 NR3C2P08235 984 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 SNRPAP09012 282 aaKnown RBP11.51□□□□□ -0.57
LIMS1-207ENST00000422797 DLDP09622 509 aaKnown RBP11.51□□□□□ -0.57
LIMS1-207ENST00000422797 SUPT20HL2P0C7V6 817 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 SP100P23497 879 aaPredicted RBP11.51□□□□□ -0.57
LIMS1-207ENST00000422797 KDELR1P24390 212 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 RPL22P35268 128 aaKnown RBP11.51□□□□□ -0.57
LIMS1-207ENST00000422797 PGM1P36871 562 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 CCNFP41002 786 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 SERPINB4P48594 390 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 PAPOLAP51003 745 aaKnown RBP11.51□□□□□ -0.57
LIMS1-207ENST00000422797 EFNA5P52803 228 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 RPL26P61254 145 aaKnown RBP11.51□□□□□ -0.57
LIMS1-207ENST00000422797 ROR1Q01973 937 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 SLC25A11Q02978 314 aaKnown RBP11.51□□□□□ -0.57
LIMS1-207ENST00000422797 DYNC1I2Q13409 638 aaKnown RBP11.51□□□□□ -0.57
LIMS1-207ENST00000422797 BBS9Q3SYG4 887 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 SUPT20HL1Q3ZLR7 823 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 KHDC1Q4VXA5 237 aaKnown RBP11.51□□□□□ -0.57
LIMS1-207ENST00000422797 SPOPLQ6IQ16 392 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 ABHD15Q6UXT9 468 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 ADGRG6Q86SQ4 1221 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 GALNT15Q8N3T1 639 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 PDCD7Q8N8D1 485 aaKnown RBP11.51□□□□□ -0.57
LIMS1-207ENST00000422797 RFWD2Q8NHY2 731 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 TEKT4Q8WW24 435 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 ADGRA2Q96PE1 1338 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 ZNF184Q99676 751 aaPredicted RBP11.51□□□□□ -0.57
LIMS1-207ENST00000422797 C1orf21Q9H246 121 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 FAM124BQ9H5Z6 455 aaPredicted RBP11.51□□□□□ -0.57
LIMS1-207ENST00000422797 RAVER2Q9HCJ3 691 aaKnown RBP11.51□□□□□ -0.57
LIMS1-207ENST00000422797 KLHL11Q9NVR0 708 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 DDX43Q9NXZ2 648 aaKnown RBP11.51□□□□□ -0.57
LIMS1-207ENST00000422797 CNTN3Q9P232 1028 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 PAK5Q9P286 719 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 DCTN4Q9UJW0 460 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 CLEC11AQ9Y240 323 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 SSX2IPQ9Y2D8 614 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 SMCHD1A6NHR9 2005 aa11.51□□□□□ -0.57
LIMS1-207ENST00000422797 SPECC1L-ADORA2AF8WAN1 911 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 H0Y3Z8 333 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 FCHO1O14526 889 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 CAPN9O14815 690 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 CST8O60676 142 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 KRT38O76015 456 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 CALCAP01258 141 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 ETS1P14921 441 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 CNTFP26441 200 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 SERPINB3P29508 390 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 SSTR1P30872 391 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 ARL2P36404 184 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 SERPINB9P50453 376 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 EIF3EP60228 445 aaKnown RBP11.5□□□□□ -0.57
LIMS1-207ENST00000422797 TGFB2P61812 414 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 AP2B1P63010 937 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 XIAPP98170 497 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 TBC1D10BQ4KMP7 808 aaPredicted RBP11.5□□□□□ -0.57
LIMS1-207ENST00000422797 C2CD6Q53TS8 623 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 PLEKHG4Q58EX7 1191 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 FNBP1LQ5T0N5 605 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 STXBP5Q5T5C0 1151 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 ANGEL2Q5VTE6 544 aaKnown RBP11.5□□□□□ -0.57
LIMS1-207ENST00000422797 CWF19L1Q69YN2 538 aaKnown RBP11.5□□□□□ -0.57
LIMS1-207ENST00000422797 GPAT2Q6NUI2 795 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 SWSAP1Q6NVH7 229 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 AAGABQ6PD74 315 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 KYAT3Q6YP21 454 aaKnown RBP11.5□□□□□ -0.57
LIMS1-207ENST00000422797 CAPN12Q6ZSI9 719 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 ARCQ7LC44 396 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 EXOC8Q8IYI6 725 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 SCYL3Q8IZE3 742 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 CPXCR1Q8N123 301 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 SCG3Q8WXD2 468 aaKnown RBP11.5□□□□□ -0.57
LIMS1-207ENST00000422797 SLC7A3Q8WY07 619 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 GMLQ99445 158 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 SH2D3AQ9BRG2 576 aa11.5□□□□□ -0.57
LIMS1-207ENST00000422797 DHX33Q9H6R0 707 aaKnown RBP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms