RNA–Protein interactions for RNA: ENST00000420482.5

PTPN4-202, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-202ENST00000420482 NCOA4Q13772 614 aa22.73■■□□□ 1.23
PTPN4-202ENST00000420482 CCINQ13939 588 aa22.73■■□□□ 1.23
PTPN4-202ENST00000420482 TDRD10Q5VZ19 366 aaKnown RBP22.73■■□□□ 1.23
PTPN4-202ENST00000420482 DCLK2Q8N568 766 aa22.73■■□□□ 1.23
PTPN4-202ENST00000420482 TTC16Q8NEE8 873 aa22.73■■□□□ 1.23
PTPN4-202ENST00000420482 OSCP1Q8WVF1 389 aa22.73■■□□□ 1.23
PTPN4-202ENST00000420482 ATP2A3Q93084 1043 aa22.73■■□□□ 1.23
PTPN4-202ENST00000420482 SLITRK1Q96PX8 696 aa22.73■■□□□ 1.23
PTPN4-202ENST00000420482 DUS2Q9NX74 493 aaKnown RBP22.73■■□□□ 1.23
PTPN4-202ENST00000420482 F8VP50 259 aa22.72■■□□□ 1.23
PTPN4-202ENST00000420482 NR3C1P04150 777 aa22.72■■□□□ 1.23
PTPN4-202ENST00000420482 TDGF1P13385 188 aa22.72■■□□□ 1.23
PTPN4-202ENST00000420482 CASP4P49662 377 aa22.72■■□□□ 1.23
PTPN4-202ENST00000420482 CLDN10P78369 228 aa22.72■■□□□ 1.23
PTPN4-202ENST00000420482 TRIM68Q6AZZ1 485 aa22.72■■□□□ 1.23
PTPN4-202ENST00000420482 ARL14EPQ8N8R7 260 aaPredicted RBP22.72■■□□□ 1.23
PTPN4-202ENST00000420482 B3GALNT2Q8NCR0 500 aa22.72■■□□□ 1.23
PTPN4-202ENST00000420482 CYP2S1Q96SQ9 504 aa22.72■■□□□ 1.23
PTPN4-202ENST00000420482 XYLT2Q9H1B5 865 aa22.72■■□□□ 1.23
PTPN4-202ENST00000420482 HPS4Q9NQG7 708 aa22.72■■□□□ 1.23
PTPN4-202ENST00000420482 DMAC2Q9NW81 257 aa22.72■■□□□ 1.23
PTPN4-202ENST00000420482 GTF3C3Q9Y5Q9 886 aa22.72■■□□□ 1.23
PTPN4-202ENST00000420482 KIF26AQ9ULI4 1882 aaPredicted RBP22.72■■□□□ 1.23
PTPN4-202ENST00000420482 LRRIQ3A6PVS8 624 aaPredicted RBP22.71■■□□□ 1.23
PTPN4-202ENST00000420482 TRDMT1O14717 391 aaKnown RBP22.71■■□□□ 1.23
PTPN4-202ENST00000420482 TCF3P15923 654 aa22.71■■□□□ 1.23
PTPN4-202ENST00000420482 DRD1P21728 446 aa22.71■■□□□ 1.23
PTPN4-202ENST00000420482 GAS6Q14393 721 aa22.71■■□□□ 1.23
PTPN4-202ENST00000420482 PUM1Q14671 1186 aaKnown RBP eCLIP22.71■■□□□ 1.23
PTPN4-202ENST00000420482 ZNF77Q15935 545 aa22.71■■□□□ 1.23
PTPN4-202ENST00000420482 SGSM1Q2NKQ1 1148 aa22.71■■□□□ 1.23
PTPN4-202ENST00000420482 CEP135Q66GS9 1140 aa22.71■■□□□ 1.23
PTPN4-202ENST00000420482 Q6ZS52 159 aa22.71■■□□□ 1.23
PTPN4-202ENST00000420482 LONP2Q86WA8 852 aa22.71■■□□□ 1.23
PTPN4-202ENST00000420482 CCDC26Q8TAB7 109 aa22.71■■□□□ 1.23
PTPN4-202ENST00000420482 TMC2Q8TDI7 906 aa22.71■■□□□ 1.23
PTPN4-202ENST00000420482 TAF4BQ92750 862 aa22.71■■□□□ 1.23
PTPN4-202ENST00000420482 TTLL2Q9BWV7 592 aa22.71■■□□□ 1.23
PTPN4-202ENST00000420482 KCTD10Q9H3F6 313 aa22.71■■□□□ 1.23
PTPN4-202ENST00000420482 ARHGAP26Q9UNA1 814 aa22.71■■□□□ 1.23
PTPN4-202ENST00000420482 C2orf78A6NCI8 922 aa22.7■■□□□ 1.22
PTPN4-202ENST00000420482 IKBKBO14920 756 aa22.7■■□□□ 1.22
PTPN4-202ENST00000420482 NDUFA8P51970 172 aa22.7■■□□□ 1.22
PTPN4-202ENST00000420482 USP4Q13107 963 aa22.7■■□□□ 1.22
PTPN4-202ENST00000420482 FBXO43Q4G163 708 aa22.7■■□□□ 1.22
PTPN4-202ENST00000420482 TMEM196Q5HYL7 178 aa22.7■■□□□ 1.22
PTPN4-202ENST00000420482 DGLUCYQ7Z3D6 616 aa22.7■■□□□ 1.22
PTPN4-202ENST00000420482 PDZD8Q8NEN9 1154 aa22.7■■□□□ 1.22
PTPN4-202ENST00000420482 SH3RF2Q8TEC5 729 aa22.7■■□□□ 1.22
PTPN4-202ENST00000420482 IMPG2Q9BZV3 1241 aa22.7■■□□□ 1.22
PTPN4-202ENST00000420482 DNAI2Q9GZS0 605 aa22.7■■□□□ 1.22
PTPN4-202ENST00000420482 GZF1Q9H116 711 aaPredicted RBP22.7■■□□□ 1.22
PTPN4-202ENST00000420482 DLL3Q9NYJ7 618 aa22.7■■□□□ 1.22
PTPN4-202ENST00000420482 GCNT4Q9P109 453 aa22.7■■□□□ 1.22
PTPN4-202ENST00000420482 NCOR2Q9Y618 2525 aa22.69■■□□□ 1.22
PTPN4-202ENST00000420482 FAM237AA0A1B0GTK4 181 aa22.69■■□□□ 1.22
PTPN4-202ENST00000420482 A0A1W2PQ27 194 aa22.69■■□□□ 1.22
PTPN4-202ENST00000420482 A0A1W2PQ64 194 aa22.69■■□□□ 1.22
PTPN4-202ENST00000420482 A0A1W2PQD8 194 aa22.69■■□□□ 1.22
PTPN4-202ENST00000420482 MAPK13O15264 365 aa22.69■■□□□ 1.22
PTPN4-202ENST00000420482 RHOBTB3O94955 611 aa22.69■■□□□ 1.22
PTPN4-202ENST00000420482 RTN3O95197 1032 aaPredicted RBP22.69■■□□□ 1.22
PTPN4-202ENST00000420482 C4BPAP04003 597 aaKnown RBP22.69■■□□□ 1.22
PTPN4-202ENST00000420482 ARSAP15289 507 aa22.69■■□□□ 1.22
PTPN4-202ENST00000420482 SDHBP21912 280 aa22.69■■□□□ 1.22
PTPN4-202ENST00000420482 RPL13P26373 211 aaKnown RBP22.69■■□□□ 1.22
PTPN4-202ENST00000420482 LAIR1Q6GTX8 287 aa22.69■■□□□ 1.22
PTPN4-202ENST00000420482 KIAA1958Q8N8K9 716 aa22.69■■□□□ 1.22
PTPN4-202ENST00000420482 SLC22A12Q96S37 553 aa22.69■■□□□ 1.22
PTPN4-202ENST00000420482 P2RY13Q9BPV8 354 aa22.69■■□□□ 1.22
PTPN4-202ENST00000420482 MED10Q9BTT4 135 aa22.69■■□□□ 1.22
PTPN4-202ENST00000420482 DPEP3Q9H4B8 488 aa22.69■■□□□ 1.22
PTPN4-202ENST00000420482 ECT2Q9H8V3 914 aa22.69■■□□□ 1.22
PTPN4-202ENST00000420482 TRAF3IP3Q9Y228 551 aa22.69■■□□□ 1.22
PTPN4-202ENST00000420482 MED19A0JLT2 244 aaPredicted RBP22.68■■□□□ 1.22
PTPN4-202ENST00000420482 NFATC1O95644 943 aa22.68■■□□□ 1.22
PTPN4-202ENST00000420482 ABL1P00519 1130 aa22.68■■□□□ 1.22
PTPN4-202ENST00000420482 HOXA6P31267 233 aa22.68■■□□□ 1.22
PTPN4-202ENST00000420482 PRR23BQ6ZRT6 265 aa22.68■■□□□ 1.22
PTPN4-202ENST00000420482 DDX42Q86XP3 938 aaKnown RBP eCLIP22.68■■□□□ 1.22
PTPN4-202ENST00000420482 NUP93Q8N1F7 819 aa22.68■■□□□ 1.22
PTPN4-202ENST00000420482 OVCA2Q8WZ82 227 aa22.68■■□□□ 1.22
PTPN4-202ENST00000420482 ZNF518BQ9C0D4 1074 aa22.68■■□□□ 1.22
PTPN4-202ENST00000420482 SMYD3Q9H7B4 428 aa22.68■■□□□ 1.22
PTPN4-202ENST00000420482 SLC8A2Q9UPR5 921 aa22.68■■□□□ 1.22
PTPN4-202ENST00000420482 ZDHHC9Q9Y397 364 aa22.68■■□□□ 1.22
PTPN4-202ENST00000420482 ZNF840PA6NDX5 716 aa22.67■■□□□ 1.22
PTPN4-202ENST00000420482 CHURC1-FNTBB4DL54 471 aa22.67■■□□□ 1.22
PTPN4-202ENST00000420482 SLC9A3R1O14745 358 aaPredicted RBP22.67■■□□□ 1.22
PTPN4-202ENST00000420482 KRT13P13646 458 aa22.67■■□□□ 1.22
PTPN4-202ENST00000420482 YWHAQP27348 245 aa22.67■■□□□ 1.22
PTPN4-202ENST00000420482 GJA4P35212 333 aa22.67■■□□□ 1.22
PTPN4-202ENST00000420482 FNTBP49356 437 aa22.67■■□□□ 1.22
PTPN4-202ENST00000420482 USP46P62068 366 aa22.67■■□□□ 1.22
PTPN4-202ENST00000420482 IFRD2Q12894 506 aaPredicted RBP22.67■■□□□ 1.22
PTPN4-202ENST00000420482 SIM2Q14190 667 aaPredicted RBP22.67■■□□□ 1.22
PTPN4-202ENST00000420482 ZACNQ401N2 412 aa22.67■■□□□ 1.22
PTPN4-202ENST00000420482 SCARA5Q6ZMJ2 495 aa22.67■■□□□ 1.22
PTPN4-202ENST00000420482 KRBA2Q6ZNG9 492 aa22.67■■□□□ 1.22
PTPN4-202ENST00000420482 INTS8Q75QN2 995 aaKnown RBP22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms