RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 KLHL38Q2WGJ6 581 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 BOLA3Q53S33 107 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 MYCBPAPQ8TBZ2 947 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 TEPSINQ96N21 525 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 PPARGC1AQ9UBK2 798 aaKnown RBP11.67□□□□□ -0.54
PTPRF-204ENST00000412568 IPO11Q9UI26 975 aaKnown RBP11.67□□□□□ -0.54
PTPRF-204ENST00000412568 PRDM4Q9UKN5 801 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 TELO2Q9Y4R8 837 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 USH1CQ9Y6N9 552 aa11.67□□□□□ -0.54
PTPRF-204ENST00000412568 MAPK13O15264 365 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 SMIM10L2AP0DMW4 78 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 SMIM10L2BP0DMW5 78 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 XPAP23025 273 aaPredicted RBP11.66□□□□□ -0.54
PTPRF-204ENST00000412568 ADSSP30520 456 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 ADIGQ0VDE8 80 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 EFHC1Q5JVL4 640 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 SYDE1Q6ZW31 735 aaPredicted RBP11.66□□□□□ -0.54
PTPRF-204ENST00000412568 HIPK4Q8NE63 616 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 TRIM4Q9C037 500 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 ASB7Q9H672 318 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 UBN1Q9NPG3 1134 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 GDF3Q9NR23 364 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 FAM8A1Q9UBU6 413 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 GPR182O15218 404 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 DHX15O43143 795 aaKnown RBP11.66□□□□□ -0.54
PTPRF-204ENST00000412568 PQBP1O60828 265 aaKnown RBP11.66□□□□□ -0.54
PTPRF-204ENST00000412568 LUC7L3O95232 432 aaKnown RBP11.66□□□□□ -0.54
PTPRF-204ENST00000412568 LYPLA2O95372 231 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 MLH1P40692 756 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 RPL21P46778 160 aaKnown RBP11.66□□□□□ -0.54
PTPRF-204ENST00000412568 FAM182AQ5T1J6 154 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 ATP6V1E2Q96A05 226 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 PWWP2AQ96N64 755 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 CDC42EP4Q9H3Q1 356 aaKnown RBP11.66□□□□□ -0.54
PTPRF-204ENST00000412568 NXF3Q9H4D5 531 aaKnown RBP11.66□□□□□ -0.54
PTPRF-204ENST00000412568 STARD7Q9NQZ5 370 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 FGFR1OP2Q9NVK5 253 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 TJP2Q9UDY2 1190 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 DNPEPQ9ULA0 475 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 MYH14Q7Z406 1995 aaKnown RBP11.66□□□□□ -0.54
PTPRF-204ENST00000412568 A0A0B4J269 797 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 KPNA7A9QM74 516 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 H0Y3Z8 333 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 PPP1R12AO14974 1030 aaPredicted RBP11.66□□□□□ -0.54
PTPRF-204ENST00000412568 AARSP49588 968 aaKnown RBP eCLIP11.66□□□□□ -0.54
PTPRF-204ENST00000412568 SCNN1GP51170 649 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 TKTL1P51854 596 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 ZNF200P98182 395 aaPredicted RBP11.66□□□□□ -0.54
PTPRF-204ENST00000412568 NR1H3Q13133 447 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 PDE1CQ14123 709 aaPredicted RBP11.66□□□□□ -0.54
PTPRF-204ENST00000412568 AFAP1L2Q8N4X5 818 aa11.66□□□□□ -0.54
PTPRF-204ENST00000412568 ZC3H15Q8WU90 426 aaKnown RBP11.66□□□□□ -0.54
PTPRF-204ENST00000412568 SUDS3Q9H7L9 328 aaPredicted RBP11.66□□□□□ -0.54
PTPRF-204ENST00000412568 MYPNQ86TC9 1320 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 ARIH2O95376 493 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 ETS1P14921 441 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 ELNP15502 786 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 PNPLA4P41247 253 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 MARSP56192 900 aaKnown RBP11.65□□□□□ -0.54
PTPRF-204ENST00000412568 C1QBPQ07021 282 aaKnown RBP11.65□□□□□ -0.54
PTPRF-204ENST00000412568 MROH9Q5TGP6 573 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 SLC25A41Q8N5S1 370 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 RMDN1Q96DB5 314 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 MBOAT7Q96N66 472 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 CYTH2Q99418 400 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 CNPY3Q9BT09 278 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 DDX23Q9BUQ8 820 aaKnown RBP11.65□□□□□ -0.54
PTPRF-204ENST00000412568 WDCPQ9H6R7 721 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 TMEM134Q9H6X4 195 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 PSTPIP1O43586 416 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 PMPCBO75439 489 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 ZFXP17010 805 aaPredicted RBP11.65□□□□□ -0.54
PTPRF-204ENST00000412568 MIPP30301 263 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 ACCSLQ4AC99 568 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 C11orf63Q6NUN7 778 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 MTHFD1LQ6UB35 978 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 DENND5BQ6ZUT9 1274 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 IPMKQ8NFU5 416 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 C18orf25Q96B23 403 aaPredicted RBP11.65□□□□□ -0.54
PTPRF-204ENST00000412568 IFT43Q96FT9 208 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 ADAM2Q99965 735 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 CFLARO15519 480 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 SH3BP5O60239 455 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 RARGP13631 454 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 DNAJB2P25686 324 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 C10orf120Q5SQS8 335 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 TMC3Q7Z5M5 1100 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 CELF6Q96J87 481 aaKnown RBP11.65□□□□□ -0.54
PTPRF-204ENST00000412568 TXLNGQ9NUQ3 528 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 AP4E1Q9UPM8 1137 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 PCDHA3Q9Y5H8 950 aa11.65□□□□□ -0.54
PTPRF-204ENST00000412568 MROH7Q68CQ1 1323 aa11.65□□□□□ -0.55
PTPRF-204ENST00000412568 CICQ96RK0 1608 aaPredicted RBP11.65□□□□□ -0.55
PTPRF-204ENST00000412568 ACADSBP45954 432 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 BCAT1P54687 386 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 PRAMEP78395 509 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 COG7P83436 770 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 ZNF844Q08AG5 666 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 MAP2K5Q13163 448 aa11.64□□□□□ -0.55
PTPRF-204ENST00000412568 WSCD1Q658N2 575 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 97 ms