RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 SLC4A11Q8NBS3 891 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 MCUQ8NE86 351 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 PIP4K2CQ8TBX8 421 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 AFG1LQ8WV93 481 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 OXNAD1Q96HP4 312 aaPredicted RBP6□□□□□ -1.45
CCDC88A-203ENST00000412148 NLRP4Q96MN2 994 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 ZNF184Q99676 751 aaPredicted RBP6□□□□□ -1.45
CCDC88A-203ENST00000412148 FAM213AQ9BRX8 229 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 WWP1Q9H0M0 922 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 PORCNQ9H237 461 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 DBNDD1Q9H9R9 158 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 KIF9Q9HAQ2 790 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 CYP26B1Q9NR63 512 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 PAPOLBQ9NRJ5 636 aaKnown RBP6□□□□□ -1.45
CCDC88A-203ENST00000412148 ARL8BQ9NVJ2 186 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 HEY2Q9UBP5 337 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 ZNF70Q9UC06 446 aaPredicted RBP6□□□□□ -1.45
CCDC88A-203ENST00000412148 ADAMTS5Q9UNA0 930 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 PCDHB4Q9Y5E5 795 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 PAPPA2Q9BXP8 1791 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 IGKV6D-21A0A0A0MT36 114 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 ZNF862O60290 1169 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 FAM189A1O60320 539 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 LPXNO60711 386 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 ENTPD5O75356 428 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 ICAM3P32942 547 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 RPL22P35268 128 aaKnown RBP6□□□□□ -1.45
CCDC88A-203ENST00000412148 RFC5P40937 340 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 MAGEA3P43357 314 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 LIG4P49917 911 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 RBM5P52756 815 aaKnown RBP eCLIP6□□□□□ -1.45
CCDC88A-203ENST00000412148 ACTR3P61158 418 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 UBXN2AP68543 259 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 WASHC5Q12768 1159 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 DYNC1I2Q13409 638 aaKnown RBP6□□□□□ -1.45
CCDC88A-203ENST00000412148 HADHQ16836 314 aaKnown RBP6□□□□□ -1.45
CCDC88A-203ENST00000412148 KCTD19Q17RG1 926 aaPredicted RBP6□□□□□ -1.45
CCDC88A-203ENST00000412148 TEX44Q53QW1 395 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 LGSNQ5TDP6 509 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 ATG16L1Q676U5 607 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 ABHD15Q6UXT9 468 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 C3orf62Q6ZUJ4 267 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 NCAPG2Q86XI2 1143 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 TMEM126BQ8IUX1 230 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 C4orf33Q8N1A6 199 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 RFWD2Q8NHY2 731 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 TTC8Q8TAM2 541 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 CCDC110Q8TBZ0 833 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 NRG4Q8WWG1 115 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 PTPRN2Q92932 1015 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 AKT1S1Q96B36 256 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 RSAD1Q9HA92 442 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 NPHS2Q9NP85 383 aa6□□□□□ -1.45
CCDC88A-203ENST00000412148 RYDENQ9NUL5 291 aaKnown RBP6□□□□□ -1.45
CCDC88A-203ENST00000412148 MAFBQ9Y5Q3 323 aaPredicted RBP6□□□□□ -1.45
CCDC88A-203ENST00000412148 PTPRFP10586 1907 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 PTPRJQ12913 1337 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 MED7O43513 233 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 TBX10O75333 385 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 MT-ND3P03897 115 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 SERPINA6P08185 405 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 KDELR1P24390 212 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 PSMC4P43686 418 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 SERPINB4P48594 390 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 VPS41P49754 854 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 TGFB2P61812 414 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 RPL7AP62424 266 aaKnown RBP5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 MXRA7P84157 204 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 ZNF200P98182 395 aaPredicted RBP5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 OGDHQ02218 1023 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 NAB1Q13506 487 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 TFDP1Q14186 410 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 GRM2Q14416 872 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 NOMO1Q15155 1222 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 SEPT7Q16181 437 aaKnown RBP5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 PDCD2Q16342 344 aaPredicted RBP5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 FAM47CQ5HY64 1035 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 FNBP1LQ5T0N5 605 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 AP1ARQ63HQ0 302 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 TMEM154Q6P9G4 183 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 TMEM270Q6UE05 265 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 DSTYKQ6XUX3 929 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 SDCCAG8Q86SQ7 713 aaPredicted RBP5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 PRUNE1Q86TP1 453 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 SLC26A11Q86WA9 606 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 FBXO36Q8NEA4 188 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 ACMSDQ8TDX5 336 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 TEKT4Q8WW24 435 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 SCG3Q8WXD2 468 aaKnown RBP5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 JADE3Q92613 823 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 CEP170P1Q96L14 293 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 AGBL1Q96MI9 1066 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 PI4K2AQ9BTU6 479 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 TMEM120AQ9BXJ8 343 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 IMPG2Q9BZV3 1241 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 DNAJC17Q9NVM6 304 aaKnown RBP5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 GTF2IRD1Q9UHL9 959 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 PLLPQ9Y342 182 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 NUB1Q9Y5A7 615 aa5.99□□□□□ -1.45
CCDC88A-203ENST00000412148 ZNF541Q9H0D2 1346 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms