RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 ZMIZ2Q8NF64 920 aa20.28■□□□□ 0.84
SF3A1-202ENST00000411423 WHAMMQ8TF30 809 aa20.28■□□□□ 0.84
SF3A1-202ENST00000411423 CLDN23Q96B33 292 aa20.28■□□□□ 0.84
SF3A1-202ENST00000411423 CHFRQ96EP1 664 aa20.28■□□□□ 0.84
SF3A1-202ENST00000411423 OSBPL6Q9BZF3 934 aa20.28■□□□□ 0.84
SF3A1-202ENST00000411423 TRPC7Q9HCX4 862 aa20.28■□□□□ 0.84
SF3A1-202ENST00000411423 OTOL1A6NHN0 477 aaPredicted RBP20.27■□□□□ 0.84
SF3A1-202ENST00000411423 PPP1R3GB7ZBB8 358 aa20.27■□□□□ 0.84
SF3A1-202ENST00000411423 CCNE1P24864 410 aa20.27■□□□□ 0.84
SF3A1-202ENST00000411423 AVPR1AP37288 418 aa20.27■□□□□ 0.84
SF3A1-202ENST00000411423 FAM3CQ92520 227 aa20.27■□□□□ 0.84
SF3A1-202ENST00000411423 DUSP9Q99956 384 aaKnown RBP20.27■□□□□ 0.84
SF3A1-202ENST00000411423 FAM83CQ9BQN1 747 aa20.27■□□□□ 0.84
SF3A1-202ENST00000411423 ELOVL4Q9GZR5 314 aa20.27■□□□□ 0.84
SF3A1-202ENST00000411423 HPS4Q9NQG7 708 aa20.27■□□□□ 0.84
SF3A1-202ENST00000411423 TDP1Q9NUW8 608 aa20.27■□□□□ 0.84
SF3A1-202ENST00000411423 ZNF638Q14966 1978 aaKnown RBP20.26■□□□□ 0.83
SF3A1-202ENST00000411423 BIN1O00499 593 aa20.26■□□□□ 0.83
SF3A1-202ENST00000411423 TNFRSF10BO14763 440 aa20.26■□□□□ 0.83
SF3A1-202ENST00000411423 KINO60870 393 aaKnown RBP20.26■□□□□ 0.83
SF3A1-202ENST00000411423 EPB41P11171 864 aaKnown RBP20.26■□□□□ 0.83
SF3A1-202ENST00000411423 ANXA13P27216 316 aa20.26■□□□□ 0.83
SF3A1-202ENST00000411423 INCA1Q0VD86 236 aa20.26■□□□□ 0.83
SF3A1-202ENST00000411423 MORC3Q14149 939 aa20.26■□□□□ 0.83
SF3A1-202ENST00000411423 ARHGAP29Q52LW3 1261 aa20.26■□□□□ 0.83
SF3A1-202ENST00000411423 KRT39Q6A163 491 aa20.26■□□□□ 0.83
SF3A1-202ENST00000411423 FRMD5Q7Z6J6 570 aa20.26■□□□□ 0.83
SF3A1-202ENST00000411423 C1orf210Q8IVY1 113 aa20.26■□□□□ 0.83
SF3A1-202ENST00000411423 CRYBG2Q8N1P7 616 aa20.26■□□□□ 0.83
SF3A1-202ENST00000411423 CEP295NLQ96MC4 621 aa20.26■□□□□ 0.83
SF3A1-202ENST00000411423 SMOQ99835 787 aa20.26■□□□□ 0.83
SF3A1-202ENST00000411423 GKN1Q9NS71 199 aa20.26■□□□□ 0.83
SF3A1-202ENST00000411423 FAM49BQ9NUQ9 324 aa20.26■□□□□ 0.83
SF3A1-202ENST00000411423 CHMP5Q9NZZ3 219 aa20.26■□□□□ 0.83
SF3A1-202ENST00000411423 SOBPA7XYQ1 873 aa20.25■□□□□ 0.83
SF3A1-202ENST00000411423 P4HA1P13674 534 aa20.25■□□□□ 0.83
SF3A1-202ENST00000411423 ARSAP15289 507 aa20.25■□□□□ 0.83
SF3A1-202ENST00000411423 GTF2H1P32780 548 aa20.25■□□□□ 0.83
SF3A1-202ENST00000411423 NBL1P41271 181 aa20.25■□□□□ 0.83
SF3A1-202ENST00000411423 FKBP3Q00688 224 aaKnown RBP20.25■□□□□ 0.83
SF3A1-202ENST00000411423 IFRD2Q12894 506 aaPredicted RBP20.25■□□□□ 0.83
SF3A1-202ENST00000411423 TAF10Q12962 218 aa20.25■□□□□ 0.83
SF3A1-202ENST00000411423 ZNF268Q14587 947 aaPredicted RBP20.25■□□□□ 0.83
SF3A1-202ENST00000411423 ZNF77Q15935 545 aa20.25■□□□□ 0.83
SF3A1-202ENST00000411423 UNC93AQ86WB7 457 aa20.25■□□□□ 0.83
SF3A1-202ENST00000411423 SCAMP5Q8TAC9 235 aa20.25■□□□□ 0.83
SF3A1-202ENST00000411423 SLC2A14Q8TDB8 520 aa20.25■□□□□ 0.83
SF3A1-202ENST00000411423 CSGALNACT1Q8TDX6 532 aa20.25■□□□□ 0.83
SF3A1-202ENST00000411423 TATDN2Q93075 761 aa20.25■□□□□ 0.83
SF3A1-202ENST00000411423 TNIP3Q96KP6 325 aa20.25■□□□□ 0.83
SF3A1-202ENST00000411423 ARID3AQ99856 593 aa20.25■□□□□ 0.83
SF3A1-202ENST00000411423 MED10Q9BTT4 135 aa20.25■□□□□ 0.83
SF3A1-202ENST00000411423 NIF3L1Q9GZT8 377 aa20.25■□□□□ 0.83
SF3A1-202ENST00000411423 RNF38Q9H0F5 515 aa20.25■□□□□ 0.83
SF3A1-202ENST00000411423 ZMYM5Q9UJ78 669 aa20.25■□□□□ 0.83
SF3A1-202ENST00000411423 ZNF840PA6NDX5 716 aa20.24■□□□□ 0.83
SF3A1-202ENST00000411423 SPECC1L-ADORA2AF8WAN1 911 aa20.24■□□□□ 0.83
SF3A1-202ENST00000411423 MAN2B1O00754 1011 aa20.24■□□□□ 0.83
SF3A1-202ENST00000411423 SLC16A3O15427 465 aaKnown RBP20.24■□□□□ 0.83
SF3A1-202ENST00000411423 SP9P0CG40 484 aa20.24■□□□□ 0.83
SF3A1-202ENST00000411423 CHRNB1P11230 501 aa20.24■□□□□ 0.83
SF3A1-202ENST00000411423 CD58P19256 250 aa20.24■□□□□ 0.83
SF3A1-202ENST00000411423 CTHP32929 405 aa20.24■□□□□ 0.83
SF3A1-202ENST00000411423 PGFP49763 221 aa20.24■□□□□ 0.83
SF3A1-202ENST00000411423 MXI1P50539 228 aa20.24■□□□□ 0.83
SF3A1-202ENST00000411423 LRRC63Q05C16 580 aa20.24■□□□□ 0.83
SF3A1-202ENST00000411423 USP4Q13107 963 aa20.24■□□□□ 0.83
SF3A1-202ENST00000411423 GAS6Q14393 721 aa20.24■□□□□ 0.83
SF3A1-202ENST00000411423 DCAF17Q5H9S7 520 aaPredicted RBP20.24■□□□□ 0.83
SF3A1-202ENST00000411423 KLHL10Q6JEL2 608 aa20.24■□□□□ 0.83
SF3A1-202ENST00000411423 TTI2Q6NXR4 508 aa20.24■□□□□ 0.83
SF3A1-202ENST00000411423 TSG101Q99816 390 aa20.24■□□□□ 0.83
SF3A1-202ENST00000411423 IRF2BPLQ9H1B7 796 aa20.24■□□□□ 0.83
SF3A1-202ENST00000411423 EBF3Q9H4W6 596 aa20.24■□□□□ 0.83
SF3A1-202ENST00000411423 KRT82Q9NSB4 513 aa20.24■□□□□ 0.83
SF3A1-202ENST00000411423 RBM12Q9NTZ6 932 aaKnown RBP20.24■□□□□ 0.83
SF3A1-202ENST00000411423 RAB20Q9NX57 234 aa20.24■□□□□ 0.83
SF3A1-202ENST00000411423 HOOK1Q9UJC3 728 aaKnown RBP20.24■□□□□ 0.83
SF3A1-202ENST00000411423 TRAV19A0A0A6YYK7 116 aa20.23■□□□□ 0.83
SF3A1-202ENST00000411423 PROB1E7EW31 1015 aa20.23■□□□□ 0.83
SF3A1-202ENST00000411423 CILPO75339 1184 aa20.23■□□□□ 0.83
SF3A1-202ENST00000411423 AP1G2O75843 785 aa20.23■□□□□ 0.83
SF3A1-202ENST00000411423 CKMP06732 381 aa20.23■□□□□ 0.83
SF3A1-202ENST00000411423 RPS9P46781 194 aaKnown RBP20.23■□□□□ 0.83
SF3A1-202ENST00000411423 KPNA1P52294 538 aaPredicted RBP20.23■□□□□ 0.83
SF3A1-202ENST00000411423 SLC5A3P53794 718 aa20.23■□□□□ 0.83
SF3A1-202ENST00000411423 MLLT6P55198 1093 aaPredicted RBP20.23■□□□□ 0.83
SF3A1-202ENST00000411423 NAIF1Q69YI7 327 aaPredicted RBP20.23■□□□□ 0.83
SF3A1-202ENST00000411423 ASCL5Q7RTU5 278 aa20.23■□□□□ 0.83
SF3A1-202ENST00000411423 GPRIN1Q7Z2K8 1008 aa20.23■□□□□ 0.83
SF3A1-202ENST00000411423 NUP93Q8N1F7 819 aa20.23■□□□□ 0.83
SF3A1-202ENST00000411423 SLC35C1Q96A29 364 aa20.23■□□□□ 0.83
SF3A1-202ENST00000411423 SMARCD1Q96GM5 515 aa20.23■□□□□ 0.83
SF3A1-202ENST00000411423 DHTKD1Q96HY7 919 aaPredicted RBP20.23■□□□□ 0.83
SF3A1-202ENST00000411423 NELL2Q99435 816 aa20.23■□□□□ 0.83
SF3A1-202ENST00000411423 KIF9Q9HAQ2 790 aa20.23■□□□□ 0.83
SF3A1-202ENST00000411423 LMAN1LQ9HAT1 526 aa20.23■□□□□ 0.83
SF3A1-202ENST00000411423 CYP3A43Q9HB55 503 aa20.23■□□□□ 0.83
SF3A1-202ENST00000411423 CSNK1G1Q9HCP0 422 aa20.23■□□□□ 0.83
SF3A1-202ENST00000411423 SPATA6Q9NWH7 488 aaPredicted RBP20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms