RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 ALDH18A1P54886 795 aaKnown RBP21.95■■□□□ 1.1
CTCF-202ENST00000401394 PEX6Q13608 980 aa21.95■■□□□ 1.1
CTCF-202ENST00000401394 UBAP2LQ14157 1087 aaKnown RBP21.95■■□□□ 1.1
CTCF-202ENST00000401394 PTPN20Q4JDL3 420 aa21.95■■□□□ 1.1
CTCF-202ENST00000401394 ZNF677Q86XU0 584 aa21.95■■□□□ 1.1
CTCF-202ENST00000401394 RBM15BQ8NDT2 890 aaKnown RBP21.95■■□□□ 1.1
CTCF-202ENST00000401394 ASCC2Q9H1I8 757 aaPredicted RBP21.95■■□□□ 1.1
CTCF-202ENST00000401394 ANKEF1Q9NU02 776 aa21.95■■□□□ 1.1
CTCF-202ENST00000401394 STOML1Q9UBI4 398 aa21.95■■□□□ 1.1
CTCF-202ENST00000401394 NXF1Q9UBU9 619 aaKnown RBP21.95■■□□□ 1.1
CTCF-202ENST00000401394 SHOC2Q9UQ13 582 aa21.95■■□□□ 1.1
CTCF-202ENST00000401394 E2F8A0AVK6 867 aa21.94■■□□□ 1.1
CTCF-202ENST00000401394 LIN7AO14910 233 aaPredicted RBP21.94■■□□□ 1.1
CTCF-202ENST00000401394 BPIFB4P59827 614 aa21.94■■□□□ 1.1
CTCF-202ENST00000401394 CDK16Q00536 496 aa21.94■■□□□ 1.1
CTCF-202ENST00000401394 C1QBPQ07021 282 aaKnown RBP21.94■■□□□ 1.1
CTCF-202ENST00000401394 NETO2Q8NC67 525 aa21.94■■□□□ 1.1
CTCF-202ENST00000401394 ATG4CQ96DT6 458 aa21.94■■□□□ 1.1
CTCF-202ENST00000401394 OXNAD1Q96HP4 312 aaPredicted RBP21.94■■□□□ 1.1
CTCF-202ENST00000401394 THTPAQ9BU02 230 aa21.94■■□□□ 1.1
CTCF-202ENST00000401394 PIH1D1Q9NWS0 290 aaKnown RBP21.94■■□□□ 1.1
CTCF-202ENST00000401394 PPARGC1AQ9UBK2 798 aaKnown RBP21.94■■□□□ 1.1
CTCF-202ENST00000401394 POLIQ9UNA4 740 aa21.94■■□□□ 1.1
CTCF-202ENST00000401394 GRAP2O75791 330 aa21.94■■□□□ 1.1
CTCF-202ENST00000401394 ITGAVP06756 1048 aa21.94■■□□□ 1.1
CTCF-202ENST00000401394 CD19P15391 556 aa21.94■■□□□ 1.1
CTCF-202ENST00000401394 CACNA2D1P54289 1103 aa21.94■■□□□ 1.1
CTCF-202ENST00000401394 LMNB2Q03252 620 aa21.94■■□□□ 1.1
CTCF-202ENST00000401394 PRKD1Q15139 912 aaPredicted RBP21.94■■□□□ 1.1
CTCF-202ENST00000401394 C11orf91Q3C1V1 193 aa21.94■■□□□ 1.1
CTCF-202ENST00000401394 PPIL6Q8IXY8 311 aa21.94■■□□□ 1.1
CTCF-202ENST00000401394 TEX9Q8N6V9 391 aa21.94■■□□□ 1.1
CTCF-202ENST00000401394 EGFRP00533 1210 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 NR3C2P08235 984 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 ETS2P15036 469 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 GARTP22102 1010 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 SLC34A1Q06495 639 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 C1orf228Q6PIY5 440 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 RFX6Q8HWS3 928 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 HIPK4Q8NE63 616 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 SH3TC2Q8TF17 1288 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 FAM151AQ8WW52 585 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 NKD2Q969F2 451 aaPredicted RBP21.93■■□□□ 1.1
CTCF-202ENST00000401394 CISHQ9NSE2 258 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 SLC9A2Q9UBY0 812 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 TRIM49D1C9J1S8 452 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 MRPS35P82673 323 aaKnown RBP21.93■■□□□ 1.1
CTCF-202ENST00000401394 ARMC3Q5W041 872 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 USP37Q86T82 979 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 UNC5BQ8IZJ1 945 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 TCHPQ9BT92 498 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 CNTNAP2Q9UHC6 1331 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 SERPINB4P48594 390 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 JAK3P52333 1124 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 POU5F2Q8N7G0 328 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 JDP2Q8WYK2 163 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 DHRS4Q9BTZ2 278 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 MAGEB5Q9BZ81 275 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 PDLIM7Q9NR12 457 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 SMYD2Q9NRG4 433 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 SENP1Q9P0U3 644 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 PPM1HQ9ULR3 514 aa21.93■■□□□ 1.1
CTCF-202ENST00000401394 K7ERI5 159 aa21.92■■□□□ 1.1
CTCF-202ENST00000401394 BST1Q10588 318 aa21.92■■□□□ 1.1
CTCF-202ENST00000401394 TRAF1Q13077 416 aa21.92■■□□□ 1.1
CTCF-202ENST00000401394 KRT27Q7Z3Y8 459 aa21.92■■□□□ 1.1
CTCF-202ENST00000401394 CEP120Q8N960 986 aa21.92■■□□□ 1.1
CTCF-202ENST00000401394 PGLYRP2Q96PD5 576 aa21.92■■□□□ 1.1
CTCF-202ENST00000401394 SRPK1Q96SB4 655 aaKnown RBP21.92■■□□□ 1.1
CTCF-202ENST00000401394 SAR1AQ9NR31 198 aa21.92■■□□□ 1.1
CTCF-202ENST00000401394 ZNF277Q9NRM2 450 aaPredicted RBP21.92■■□□□ 1.1
CTCF-202ENST00000401394 GPATCH2LQ9NWQ4 482 aa21.92■■□□□ 1.1
CTCF-202ENST00000401394 NPM3O75607 178 aaKnown RBP21.92■■□□□ 1.1
CTCF-202ENST00000401394 RBP3P10745 1247 aa21.92■■□□□ 1.1
CTCF-202ENST00000401394 EIF3EP60228 445 aaKnown RBP21.92■■□□□ 1.1
CTCF-202ENST00000401394 SLC25A11Q02978 314 aaKnown RBP21.92■■□□□ 1.1
CTCF-202ENST00000401394 CDO1Q16878 200 aa21.92■■□□□ 1.1
CTCF-202ENST00000401394 PRAMEF18Q5VWM3 479 aa21.92■■□□□ 1.1
CTCF-202ENST00000401394 FBXO41Q8TF61 875 aa21.92■■□□□ 1.1
CTCF-202ENST00000401394 STMN2Q93045 179 aa21.92■■□□□ 1.1
CTCF-202ENST00000401394 PIWIL1Q96J94 861 aaKnown RBP21.92■■□□□ 1.1
CTCF-202ENST00000401394 PANX3Q96QZ0 392 aa21.92■■□□□ 1.1
CTCF-202ENST00000401394 SLC38A10Q9HBR0 1119 aa21.92■■□□□ 1.1
CTCF-202ENST00000401394 SDAD1Q9NVU7 687 aaKnown RBP eCLIP21.92■■□□□ 1.1
CTCF-202ENST00000401394 HMGXB4Q9UGU5 601 aa21.92■■□□□ 1.1
CTCF-202ENST00000401394 PACSIN3Q9UKS6 424 aa21.92■■□□□ 1.1
CTCF-202ENST00000401394 DRG1Q9Y295 367 aaKnown RBP21.92■■□□□ 1.1
CTCF-202ENST00000401394 ASB3Q9Y575 518 aa21.92■■□□□ 1.1
CTCF-202ENST00000401394 RARBP10826 455 aa21.91■■□□□ 1.1
CTCF-202ENST00000401394 ACTR2P61160 394 aa21.91■■□□□ 1.1
CTCF-202ENST00000401394 SNRPFP62306 86 aaKnown RBP21.91■■□□□ 1.1
CTCF-202ENST00000401394 KRT76Q01546 638 aa21.91■■□□□ 1.1
CTCF-202ENST00000401394 EMC2Q15006 297 aa21.91■■□□□ 1.1
CTCF-202ENST00000401394 SPATA18Q8TC71 538 aa21.91■■□□□ 1.1
CTCF-202ENST00000401394 ZC3H11AO75152 810 aaKnown RBP eCLIP21.91■■□□□ 1.1
CTCF-202ENST00000401394 GJB1P08034 283 aa21.91■■□□□ 1.1
CTCF-202ENST00000401394 KCNA2P16389 499 aa21.91■■□□□ 1.1
CTCF-202ENST00000401394 SH2D5Q6ZV89 423 aa21.91■■□□□ 1.1
CTCF-202ENST00000401394 PRR5-ARHGAP8B1AHC4 643 aa21.9■■□□□ 1.1
CTCF-202ENST00000401394 LYPLA1O75608 230 aaPredicted RBP21.9■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms