RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 OR5B17Q8NGF7 314 aa11.06□□□□□ -0.64
NEDD8-202ENST00000396828 NOC3LQ8WTT2 800 aaKnown RBP11.06□□□□□ -0.64
NEDD8-202ENST00000396828 NELFBQ8WX92 580 aa11.06□□□□□ -0.64
NEDD8-202ENST00000396828 SECISBP2LQ93073 1101 aaKnown RBP11.06□□□□□ -0.64
NEDD8-202ENST00000396828 CNTNAP3BQ96NU0 1288 aa11.06□□□□□ -0.64
NEDD8-202ENST00000396828 ACCSQ96QU6 501 aa11.06□□□□□ -0.64
NEDD8-202ENST00000396828 TSG101Q99816 390 aa11.06□□□□□ -0.64
NEDD8-202ENST00000396828 CNTNAP3Q9BZ76 1288 aa11.06□□□□□ -0.64
NEDD8-202ENST00000396828 MTMR12Q9C0I1 747 aa11.06□□□□□ -0.64
NEDD8-202ENST00000396828 GRPEL1Q9HAV7 217 aa11.06□□□□□ -0.64
NEDD8-202ENST00000396828 RXFP3Q9NSD7 469 aa11.06□□□□□ -0.64
NEDD8-202ENST00000396828 SEMA4GQ9NTN9 838 aa11.06□□□□□ -0.64
NEDD8-202ENST00000396828 RBAKQ9NYW8 714 aaPredicted RBP11.06□□□□□ -0.64
NEDD8-202ENST00000396828 RWDD2AQ9UIY3 292 aa11.06□□□□□ -0.64
NEDD8-202ENST00000396828 CDV3Q9UKY7 258 aaKnown RBP11.06□□□□□ -0.64
NEDD8-202ENST00000396828 CTNND2Q9UQB3 1225 aa11.06□□□□□ -0.64
NEDD8-202ENST00000396828 NME7Q9Y5B8 376 aa11.06□□□□□ -0.64
NEDD8-202ENST00000396828 PCDHB13Q9Y5F0 798 aa11.06□□□□□ -0.64
NEDD8-202ENST00000396828 UBE4BO95155 1302 aa11.06□□□□□ -0.64
NEDD8-202ENST00000396828 GREB1Q4ZG55 1949 aa11.05□□□□□ -0.64
NEDD8-202ENST00000396828 LOC105378220A0A1B0GUY1 285 aaPredicted RBP11.05□□□□□ -0.64
NEDD8-202ENST00000396828 PRR5-ARHGAP8B1AHC4 643 aa11.05□□□□□ -0.64
NEDD8-202ENST00000396828 EIF3DO15371 548 aaKnown RBP eCLIP11.05□□□□□ -0.64
NEDD8-202ENST00000396828 KRT19P08727 400 aa11.05□□□□□ -0.64
NEDD8-202ENST00000396828 AVPR1AP37288 418 aa11.05□□□□□ -0.64
NEDD8-202ENST00000396828 GALK1P51570 392 aa11.05□□□□□ -0.64
NEDD8-202ENST00000396828 ARHGAP8P85298 464 aa11.05□□□□□ -0.64
NEDD8-202ENST00000396828 PLCB2Q00722 1185 aa11.05□□□□□ -0.64
NEDD8-202ENST00000396828 BFSP1Q12934 665 aa11.05□□□□□ -0.64
NEDD8-202ENST00000396828 SOWAHAQ2M3V2 549 aa11.05□□□□□ -0.64
NEDD8-202ENST00000396828 INTS6LQ5JSJ4 861 aaKnown RBP11.05□□□□□ -0.64
NEDD8-202ENST00000396828 C1orf228Q6PIY5 440 aa11.05□□□□□ -0.64
NEDD8-202ENST00000396828 LUZP1Q86V48 1076 aa11.05□□□□□ -0.64
NEDD8-202ENST00000396828 MON1AQ86VX9 555 aa11.05□□□□□ -0.64
NEDD8-202ENST00000396828 NT5DC4Q86YG4 428 aa11.05□□□□□ -0.64
NEDD8-202ENST00000396828 DHX40Q8IX18 779 aaKnown RBP11.05□□□□□ -0.64
NEDD8-202ENST00000396828 ENOX1Q8TC92 643 aaKnown RBP11.05□□□□□ -0.64
NEDD8-202ENST00000396828 ZNF560Q96MR9 790 aa11.05□□□□□ -0.64
NEDD8-202ENST00000396828 GCNAQ96QF7 691 aa11.05□□□□□ -0.64
NEDD8-202ENST00000396828 ACBD6Q9BR61 282 aa11.05□□□□□ -0.64
NEDD8-202ENST00000396828 TDP1Q9NUW8 608 aa11.05□□□□□ -0.64
NEDD8-202ENST00000396828 RAB23Q9ULC3 237 aa11.05□□□□□ -0.64
NEDD8-202ENST00000396828 SNX9Q9Y5X1 595 aa11.05□□□□□ -0.64
NEDD8-202ENST00000396828 MYO16Q9Y6X6 1858 aa11.05□□□□□ -0.64
NEDD8-202ENST00000396828 C2orf78A6NCI8 922 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 TRDMT1O14717 391 aaKnown RBP11.04□□□□□ -0.64
NEDD8-202ENST00000396828 GABRDO14764 452 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 HUS1O60921 280 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 NOL4O94818 638 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 GARTP22102 1010 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 GJA4P35212 333 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 PNPLA4P41247 253 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 USP46P62068 366 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 PSMC1P62191 440 aaKnown RBP11.04□□□□□ -0.64
NEDD8-202ENST00000396828 ZXDBP98169 803 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 TSPY1Q01534 308 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 LRRC63Q05C16 580 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 SMARCB1Q12824 385 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 IQCB1Q15051 598 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 NFE2Q16621 373 aaPredicted RBP11.04□□□□□ -0.64
NEDD8-202ENST00000396828 KNOP1Q1ED39 458 aaKnown RBP11.04□□□□□ -0.64
NEDD8-202ENST00000396828 BMT2Q1RMZ1 405 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 PRR23CQ6ZRP0 262 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 EPM2AIP1Q7L775 607 aaPredicted RBP11.04□□□□□ -0.64
NEDD8-202ENST00000396828 LIMS2Q7Z4I7 341 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 KBTBD6Q86V97 674 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 WDR5BQ86VZ2 330 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 CBWD2Q8IUF1 395 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 SYCP3Q8IZU3 236 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 SYNPOQ8N3V7 929 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 TTC16Q8NEE8 873 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 ZNF507Q8TCN5 953 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 KBTBD7Q8WVZ9 684 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 ANP32BQ92688 251 aaKnown RBP11.04□□□□□ -0.64
NEDD8-202ENST00000396828 MYRFLQ96LU7 910 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 RTKNQ9BST9 563 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 LINC00597Q9H2U6 94 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 SMOC1Q9H4F8 434 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 TRPC7Q9HCX4 862 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 CRTAC1Q9NQ79 661 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 THG1LQ9NWX6 298 aaKnown RBP11.04□□□□□ -0.64
NEDD8-202ENST00000396828 GDAP2Q9NXN4 497 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 EXOC7Q9UPT5 735 aa11.04□□□□□ -0.64
NEDD8-202ENST00000396828 ZZEF1O43149 2961 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 KIAA1549LQ6ZVL6 1849 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 SLC30A4O14863 429 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 AXIN1O15169 862 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 CALUO43852 315 aaPredicted RBP11.03□□□□□ -0.64
NEDD8-202ENST00000396828 RNF40O75150 1001 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 FGFR1OPO95684 399 aaKnown RBP11.03□□□□□ -0.64
NEDD8-202ENST00000396828 CSH1P0DML2 217 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 CSH2P0DML3 217 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 HOXA6P31267 233 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 CNR2P34972 360 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 STX17P56962 302 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 MTF1Q14872 753 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 SF3A2Q15428 464 aaKnown RBP11.03□□□□□ -0.64
NEDD8-202ENST00000396828 ZNF77Q15935 545 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 CSRP2Q16527 193 aa11.03□□□□□ -0.64
NEDD8-202ENST00000396828 FAM171BQ6P995 826 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms