RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 CYP4F8P98187 520 aa23.01■■□□□ 1.27
CLN3-207ENST00000395653 PPP1R26Q5T8A7 1209 aaPredicted RBP23.01■■□□□ 1.27
CLN3-207ENST00000395653 ARHGAP17Q68EM7 881 aa23.01■■□□□ 1.27
CLN3-207ENST00000395653 ENOSF1Q7L5Y1 443 aa23.01■■□□□ 1.27
CLN3-207ENST00000395653 NUP93Q8N1F7 819 aa23.01■■□□□ 1.27
CLN3-207ENST00000395653 ZMIZ2Q8NF64 920 aa23.01■■□□□ 1.27
CLN3-207ENST00000395653 MRPS31Q92665 395 aaKnown RBP23.01■■□□□ 1.27
CLN3-207ENST00000395653 ELSPBP1Q96BH3 223 aa23.01■■□□□ 1.27
CLN3-207ENST00000395653 SMOQ99835 787 aa23.01■■□□□ 1.27
CLN3-207ENST00000395653 BPIFA3Q9BQP9 254 aa23.01■■□□□ 1.27
CLN3-207ENST00000395653 FUCA2Q9BTY2 467 aa23.01■■□□□ 1.27
CLN3-207ENST00000395653 GREB1Q4ZG55 1949 aa23.01■■□□□ 1.27
CLN3-207ENST00000395653 MYO10Q9HD67 2058 aa23.01■■□□□ 1.27
CLN3-207ENST00000395653 RTN3O95197 1032 aaPredicted RBP23■■□□□ 1.27
CLN3-207ENST00000395653 PON1P27169 355 aa23■■□□□ 1.27
CLN3-207ENST00000395653 WEE1P30291 646 aa23■■□□□ 1.27
CLN3-207ENST00000395653 SIGLEC14Q08ET2 396 aa23■■□□□ 1.27
CLN3-207ENST00000395653 NCAPHQ15003 741 aa23■■□□□ 1.27
CLN3-207ENST00000395653 TMEM270Q6UE05 265 aa23■■□□□ 1.27
CLN3-207ENST00000395653 CLEC20AQ6ZU45 233 aa23■■□□□ 1.27
CLN3-207ENST00000395653 ST13P5Q8NFI4 369 aaPredicted RBP23■■□□□ 1.27
CLN3-207ENST00000395653 KREMEN1Q96MU8 473 aa23■■□□□ 1.27
CLN3-207ENST00000395653 RPP25Q9BUL9 199 aaKnown RBP23■■□□□ 1.27
CLN3-207ENST00000395653 C1QTNF1Q9BXJ1 281 aa23■■□□□ 1.27
CLN3-207ENST00000395653 ZFP14Q9HCL3 533 aa23■■□□□ 1.27
CLN3-207ENST00000395653 PNPLA8Q9NP80 782 aa23■■□□□ 1.27
CLN3-207ENST00000395653 APEX2Q9UBZ4 518 aa23■■□□□ 1.27
CLN3-207ENST00000395653 KIAA1257Q9ULG3 409 aa23■■□□□ 1.27
CLN3-207ENST00000395653 PCDHB4Q9Y5E5 795 aa23■■□□□ 1.27
CLN3-207ENST00000395653 TNFRSF10BO14763 440 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 BEST1O76090 585 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 PAEPP09466 180 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 NPR3P17342 541 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 MAP3K7CLP57077 242 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 TANGO2Q6ICL3 276 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 KXD1Q9BQD3 176 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 SMOC2Q9H3U7 446 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 UBE2TQ9NPD8 197 aaPredicted RBP22.99■■□□□ 1.27
CLN3-207ENST00000395653 COMMD8Q9NX08 183 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 IL37Q9NZH6 218 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 TRIOO75962 3097 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 OBSL1O75147 1896 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 SYCE3A1L190 88 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 VDRP11473 427 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 SRFP11831 508 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 PPP3CCP48454 512 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 SLC5A3P53794 718 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 KRT31Q15323 416 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 SGO2Q562F6 1265 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 SMYD5Q6GMV2 418 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 TRIM67Q6ZTA4 783 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 AOPEPQ8N6M6 819 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 E2F7Q96AV8 911 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 SLC46A2Q9BY10 475 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 DUSP16Q9BY84 665 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 TAB2Q9NYJ8 693 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 CNTN6Q9UQ52 1028 aa22.99■■□□□ 1.27
CLN3-207ENST00000395653 PES1O00541 588 aaKnown RBP22.98■■□□□ 1.27
CLN3-207ENST00000395653 TPM2P07951 284 aa22.98■■□□□ 1.27
CLN3-207ENST00000395653 ZNF18P17022 549 aa22.98■■□□□ 1.27
CLN3-207ENST00000395653 YWHAQP27348 245 aa22.98■■□□□ 1.27
CLN3-207ENST00000395653 ZNF132P52740 706 aa22.98■■□□□ 1.27
CLN3-207ENST00000395653 MFAP3P55082 362 aa22.98■■□□□ 1.27
CLN3-207ENST00000395653 MON1AQ86VX9 555 aa22.98■■□□□ 1.27
CLN3-207ENST00000395653 ARID3BQ8IVW6 561 aaPredicted RBP22.98■■□□□ 1.27
CLN3-207ENST00000395653 RBBP8NLQ8NC74 664 aaPredicted RBP22.98■■□□□ 1.27
CLN3-207ENST00000395653 ANKRD20A12PQ8NF67 263 aa22.98■■□□□ 1.27
CLN3-207ENST00000395653 SLITRK1Q96PX8 696 aa22.98■■□□□ 1.27
CLN3-207ENST00000395653 TRPM5Q9NZQ8 1165 aa22.98■■□□□ 1.27
CLN3-207ENST00000395653 DENND4CQ5VZ89 1909 aa22.98■■□□□ 1.27
CLN3-207ENST00000395653 FAM92AA1XBS5 289 aa22.97■■□□□ 1.27
CLN3-207ENST00000395653 NARSO43776 548 aaKnown RBP22.97■■□□□ 1.27
CLN3-207ENST00000395653 CD19P15391 556 aa22.97■■□□□ 1.27
CLN3-207ENST00000395653 TAF10Q12962 218 aa22.97■■□□□ 1.27
CLN3-207ENST00000395653 TXNDC8Q6A555 127 aa22.97■■□□□ 1.27
CLN3-207ENST00000395653 CMTM8Q8IZV2 173 aa22.97■■□□□ 1.27
CLN3-207ENST00000395653 MAB21L3Q8N8X9 362 aa22.97■■□□□ 1.27
CLN3-207ENST00000395653 ANKRD52Q8NB46 1076 aa22.97■■□□□ 1.27
CLN3-207ENST00000395653 PDZD8Q8NEN9 1154 aa22.97■■□□□ 1.27
CLN3-207ENST00000395653 NUP210Q8TEM1 1887 aaPredicted RBP22.97■■□□□ 1.27
CLN3-207ENST00000395653 OVCA2Q8WZ82 227 aa22.97■■□□□ 1.27
CLN3-207ENST00000395653 HSD3B7Q9H2F3 369 aa22.97■■□□□ 1.27
CLN3-207ENST00000395653 SIX2Q9NPC8 291 aa22.97■■□□□ 1.27
CLN3-207ENST00000395653 SLC2A4RGQ9NR83 387 aa22.97■■□□□ 1.27
CLN3-207ENST00000395653 OBP2AQ9NY56 170 aa22.97■■□□□ 1.27
CLN3-207ENST00000395653 LIMA1Q9UHB6 759 aaKnown RBP22.97■■□□□ 1.27
CLN3-207ENST00000395653 TSPAN16Q9UKR8 245 aa22.97■■□□□ 1.27
CLN3-207ENST00000395653 PATJQ8NI35 1801 aa22.97■■□□□ 1.27
CLN3-207ENST00000395653 NCANO14594 1321 aa22.96■■□□□ 1.27
CLN3-207ENST00000395653 HHLA1C9JL84 531 aa22.96■■□□□ 1.27
CLN3-207ENST00000395653 RNF225M0QZC1 329 aaPredicted RBP22.96■■□□□ 1.27
CLN3-207ENST00000395653 GPR37L1O60883 481 aa22.96■■□□□ 1.27
CLN3-207ENST00000395653 AVPR1AP37288 418 aa22.96■■□□□ 1.27
CLN3-207ENST00000395653 VIPR2P41587 438 aa22.96■■□□□ 1.27
CLN3-207ENST00000395653 ZNF165P49910 485 aa22.96■■□□□ 1.27
CLN3-207ENST00000395653 IFRD2Q12894 506 aaPredicted RBP22.96■■□□□ 1.27
CLN3-207ENST00000395653 GJB7Q6PEY0 223 aa22.96■■□□□ 1.27
CLN3-207ENST00000395653 SCAMP5Q8TAC9 235 aa22.96■■□□□ 1.27
CLN3-207ENST00000395653 DEPDC1BQ8WUY9 529 aa22.96■■□□□ 1.27
CLN3-207ENST00000395653 PLA2G2FQ9BZM2 168 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms