RNA–Protein interactions for RNA: ENST00000389805.8

SQSTM1-202, Transcript of sequestosome 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SQSTM1, Length 2,986 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-202ENST00000389805 TROVE2P10155 538 aaKnown RBP eCLIP18.53■□□□□ 0.565e-7■□□□□ 10.5
SQSTM1-202ENST00000389805 GNA15P30679 374 aa18.53■□□□□ 0.56
SQSTM1-202ENST00000389805 TAS2R40P59535 323 aa18.53■□□□□ 0.56
SQSTM1-202ENST00000389805 NR1H3Q13133 447 aa18.53■□□□□ 0.56
SQSTM1-202ENST00000389805 IZUMO2Q6UXV1 221 aa18.53■□□□□ 0.56
SQSTM1-202ENST00000389805 MON1BQ7L1V2 547 aa18.53■□□□□ 0.56
SQSTM1-202ENST00000389805 NSL1Q96IY1 281 aa18.53■□□□□ 0.56
SQSTM1-202ENST00000389805 FAM161BQ96MY7 647 aa18.53■□□□□ 0.56
SQSTM1-202ENST00000389805 PLVAPQ9BX97 442 aa18.53■□□□□ 0.56
SQSTM1-202ENST00000389805 CNTNAP2Q9UHC6 1331 aa18.53■□□□□ 0.56
SQSTM1-202ENST00000389805 CREB3O43889 395 aa18.52■□□□□ 0.56
SQSTM1-202ENST00000389805 ETS1P14921 441 aa18.52■□□□□ 0.56
SQSTM1-202ENST00000389805 NOP14P78316 857 aaKnown RBP18.52■□□□□ 0.56
SQSTM1-202ENST00000389805 ATP13A4Q4VNC1 1196 aa18.52■□□□□ 0.56
SQSTM1-202ENST00000389805 CDR2LQ86X02 465 aaPredicted RBP18.52■□□□□ 0.56
SQSTM1-202ENST00000389805 TMEM130Q8N3G9 435 aa18.52■□□□□ 0.56
SQSTM1-202ENST00000389805 GRK7Q8WTQ7 553 aa18.52■□□□□ 0.56
SQSTM1-202ENST00000389805 SAR1AQ9NR31 198 aa18.52■□□□□ 0.56
SQSTM1-202ENST00000389805 PDP2Q9P2J9 529 aa18.52■□□□□ 0.56
SQSTM1-202ENST00000389805 STX18Q9P2W9 335 aaKnown RBP18.52■□□□□ 0.56
SQSTM1-202ENST00000389805 SNCAIPQ9Y6H5 919 aa18.52■□□□□ 0.56
SQSTM1-202ENST00000389805 LCTP09848 1927 aa18.52■□□□□ 0.56
SQSTM1-202ENST00000389805 GOLGA8SH3BPF8 625 aa18.52■□□□□ 0.56
SQSTM1-202ENST00000389805 GOLGA8MH3BSY2 632 aa18.52■□□□□ 0.56
SQSTM1-202ENST00000389805 PRPF4O43172 522 aaKnown RBP eCLIP18.52■□□□□ 0.561e-8■■■■□ 19.6
SQSTM1-202ENST00000389805 USP1O94782 785 aa18.52■□□□□ 0.56
SQSTM1-202ENST00000389805 ESRRAP11474 423 aaPredicted RBP18.52■□□□□ 0.56
SQSTM1-202ENST00000389805 CCNFP41002 786 aa18.52■□□□□ 0.56
SQSTM1-202ENST00000389805 STAT5BP51692 787 aa18.52■□□□□ 0.56
SQSTM1-202ENST00000389805 CAV1Q03135 178 aa18.52■□□□□ 0.56
SQSTM1-202ENST00000389805 LRRC71Q8N4P6 559 aa18.52■□□□□ 0.56
SQSTM1-202ENST00000389805 DDX27Q96GQ7 796 aaKnown RBP18.52■□□□□ 0.56
SQSTM1-202ENST00000389805 FAM210AQ96ND0 272 aa18.52■□□□□ 0.56
SQSTM1-202ENST00000389805 H0YCG3 227 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 PGK2P07205 417 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 GJB1P08034 283 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 TCF4P15884 667 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 CD58P19256 250 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 ICAM3P32942 547 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 TCF7P36402 384 aaPredicted RBP18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 CENPCQ03188 943 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 NCOA4Q13772 614 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 EFTUD2Q15029 972 aaKnown RBP eCLIP18.51■□□□□ 0.552e-7■■■■□ 19.3
SQSTM1-202ENST00000389805 LRRC36Q1X8D7 754 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 CFAP157Q5JU67 520 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 LBX2Q6XYB7 198 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 ANKMY2Q8IV38 441 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 OPTNQ96CV9 577 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 PTCD3Q96EY7 689 aaKnown RBP18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 CLPTM1LQ96KA5 538 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 CFAP57Q96MR6 1250 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 NEU2Q9Y3R4 380 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 NOMO3P69849 1222 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 MAMLD1Q13495 774 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 ABRAQ8N0Z2 381 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 DNERQ8NFT8 737 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 SPATA16Q9BXB7 569 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 FHDC1Q9C0D6 1143 aaPredicted RBP18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 PREBQ9HCU5 417 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 PGM1P36871 562 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 RPL7AP62424 266 aaKnown RBP18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 EAPPQ56P03 285 aaPredicted RBP18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 GADL1Q6ZQY3 521 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 ZBED8Q8IZ13 594 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 SLC25A41Q8N5S1 370 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 FBXO27Q8NI29 283 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 NIFKQ9BYG3 293 aaKnown RBP18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 SLC17A7Q9P2U7 560 aa18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 RPL26L1Q9UNX3 145 aaKnown RBP18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 SMG5Q9UPR3 1016 aaKnown RBP18.51■□□□□ 0.55
SQSTM1-202ENST00000389805 ADGRA2Q96PE1 1338 aa18.5■□□□□ 0.55
SQSTM1-202ENST00000389805 IGKV6D-21A0A0A0MT36 114 aa18.5■□□□□ 0.55
SQSTM1-202ENST00000389805 ARIH2O95376 493 aa18.5■□□□□ 0.55
SQSTM1-202ENST00000389805 ARFIP2P53365 341 aa18.5■□□□□ 0.55
SQSTM1-202ENST00000389805 OSTNP61366 133 aa18.5■□□□□ 0.55
SQSTM1-202ENST00000389805 R3HDM1Q15032 1099 aaKnown RBP18.5■□□□□ 0.55
SQSTM1-202ENST00000389805 KAZNQ674X7 775 aa18.5■□□□□ 0.55
SQSTM1-202ENST00000389805 SLFN12LQ6IEE8 588 aa18.5■□□□□ 0.55
SQSTM1-202ENST00000389805 RGS9BPQ6ZS82 235 aa18.5■□□□□ 0.55
SQSTM1-202ENST00000389805 TAB3Q8N5C8 712 aaPredicted RBP18.5■□□□□ 0.55
SQSTM1-202ENST00000389805 CHST13Q8NET6 341 aa18.5■□□□□ 0.55
SQSTM1-202ENST00000389805 MTMR12Q9C0I1 747 aa18.5■□□□□ 0.55
SQSTM1-202ENST00000389805 AVENQ9NQS1 362 aaPredicted RBP18.5■□□□□ 0.55
SQSTM1-202ENST00000389805 TYROBPO43914 113 aa18.5■□□□□ 0.55
SQSTM1-202ENST00000389805 ZWINTO95229 277 aa18.5■□□□□ 0.55
SQSTM1-202ENST00000389805 TARBP2Q15633 366 aaKnown RBP18.5■□□□□ 0.55
SQSTM1-202ENST00000389805 HSDL1Q3SXM5 330 aa18.5■□□□□ 0.55
SQSTM1-202ENST00000389805 CCDC89Q8N998 374 aa18.5■□□□□ 0.55
SQSTM1-202ENST00000389805 TRAPPC12Q8WVT3 735 aa18.5■□□□□ 0.55
SQSTM1-202ENST00000389805 ASCC2Q9H1I8 757 aaPredicted RBP18.5■□□□□ 0.55
SQSTM1-202ENST00000389805 A6NJR5 290 aa18.49■□□□□ 0.55
SQSTM1-202ENST00000389805 PI4K2BG5E9Z4 385 aa18.49■□□□□ 0.55
SQSTM1-202ENST00000389805 ADCY3O60266 1144 aa18.49■□□□□ 0.55
SQSTM1-202ENST00000389805 YY1P25490 414 aa18.49■□□□□ 0.55
SQSTM1-202ENST00000389805 BPIFB4P59827 614 aa18.49■□□□□ 0.55
SQSTM1-202ENST00000389805 ZFYVE27Q5T4F4 411 aa18.49■□□□□ 0.55
SQSTM1-202ENST00000389805 TCP10LQ8TDR4 215 aa18.49■□□□□ 0.55
SQSTM1-202ENST00000389805 CGRRF1Q99675 332 aa18.49■□□□□ 0.55
SQSTM1-202ENST00000389805 TMEM120AQ9BXJ8 343 aa18.49■□□□□ 0.55
SQSTM1-202ENST00000389805 FAM192AQ9GZU8 254 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms