RNA–Protein interactions for RNA: ENST00000378169.7

NPHP4-203, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 4,213 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-203ENST00000378169 SUDS3Q9H7L9 328 aaPredicted RBP13.74□□□□□ -0.21
NPHP4-203ENST00000378169 C20orf96Q9NUD7 363 aaPredicted RBP13.74□□□□□ -0.21
NPHP4-203ENST00000378169 PIH1D1Q9NWS0 290 aaKnown RBP13.74□□□□□ -0.21
NPHP4-203ENST00000378169 FAM8A1Q9UBU6 413 aa13.74□□□□□ -0.21
NPHP4-203ENST00000378169 AP4E1Q9UPM8 1137 aa13.74□□□□□ -0.21
NPHP4-203ENST00000378169 RPS6KL1Q9Y6S9 549 aa13.74□□□□□ -0.21
NPHP4-203ENST00000378169 STRNO43815 780 aa13.74□□□□□ -0.21
NPHP4-203ENST00000378169 BCAT1P54687 386 aa13.74□□□□□ -0.21
NPHP4-203ENST00000378169 STX3Q13277 289 aa13.74□□□□□ -0.21
NPHP4-203ENST00000378169 CYP3A43Q9HB55 503 aa13.74□□□□□ -0.21
NPHP4-203ENST00000378169 USH1CQ9Y6N9 552 aa13.74□□□□□ -0.21
NPHP4-203ENST00000378169 SPATA31C2B4DYI2 1134 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 C2CD2LO14523 706 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 TRPA1O75762 1119 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 POMCP01189 267 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 ENO1P06733 434 aaKnown RBP13.73□□□□□ -0.21
NPHP4-203ENST00000378169 MCF2P10911 925 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 DRP2Q13474 957 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 ACCSLQ4AC99 568 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 ZCWPW2Q504Y3 356 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 ACAD11Q709F0 780 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 APTXQ7Z2E3 356 aaKnown RBP13.73□□□□□ -0.21
NPHP4-203ENST00000378169 CD302Q8IX05 232 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 TFB1MQ8WVM0 346 aaKnown RBP13.73□□□□□ -0.21
NPHP4-203ENST00000378169 STAMBPL1Q96FJ0 436 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 ASB7Q9H672 318 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 GOLGA8QA0A0J9YX86 632 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 GOLGA8OA6NCC3 632 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 GOLGA8NF8WBI6 632 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 CASQ2O14958 399 aaPredicted RBP13.73□□□□□ -0.21
NPHP4-203ENST00000378169 THP07101 528 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 NFICP08651 508 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 ATXN8OSP0DMR3 200 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 PECAM1P16284 738 aaPredicted RBP13.73□□□□□ -0.21
NPHP4-203ENST00000378169 ETFBP38117 255 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 RPL7AP62424 266 aaKnown RBP13.73□□□□□ -0.21
NPHP4-203ENST00000378169 CELF3Q5SZQ8 465 aaKnown RBP13.73□□□□□ -0.21
NPHP4-203ENST00000378169 PRUNE1Q86TP1 453 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 PARP9Q8IXQ6 854 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 ADAM32Q8TC27 787 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 GCNAQ96QF7 691 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 PDGFCQ9NRA1 345 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 E5RJQ4 531 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 POLBP06746 335 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 SSTR1P30872 391 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 RFC1P35251 1148 aaPredicted RBP13.73□□□□□ -0.21
NPHP4-203ENST00000378169 TMTC4Q5T4D3 741 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 POTEAQ6S8J7 498 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 ARID3BQ8IVW6 561 aaPredicted RBP13.73□□□□□ -0.21
NPHP4-203ENST00000378169 BSNDQ8WZ55 320 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 EDEM1Q92611 657 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 N4BP2L2Q92802 583 aaPredicted RBP13.73□□□□□ -0.21
NPHP4-203ENST00000378169 PTPRN2Q92932 1015 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 TRIM62Q9BVG3 475 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 WWP1Q9H0M0 922 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 PRDM5Q9NQX1 630 aaPredicted RBP13.73□□□□□ -0.21
NPHP4-203ENST00000378169 WDR70Q9NW82 654 aa13.73□□□□□ -0.21
NPHP4-203ENST00000378169 EGFRP00533 1210 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 SKIP12755 728 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 MIPP30301 263 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 VCPP55072 806 aaKnown RBP13.72□□□□□ -0.21
NPHP4-203ENST00000378169 JAG1P78504 1218 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 IL1RL1Q01638 556 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 RRP1BQ14684 758 aaKnown RBP13.72□□□□□ -0.21
NPHP4-203ENST00000378169 TLK2Q86UE8 772 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 SPDL1Q96EA4 605 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 KREMEN1Q96MU8 473 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 GDF3Q9NR23 364 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 KRT82Q9NSB4 513 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.72□□□□□ -0.21
NPHP4-203ENST00000378169 CCT8L1PA6NM43 557 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 M0R2N6 131 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 RIPK2O43353 540 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 MICAL2O94851 1124 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 CPA2P48052 419 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 BIRC2Q13490 618 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 ACVR2BQ13705 512 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 DTX3LQ8TDB6 740 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 SGF29Q96ES7 293 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 AVENQ9NQS1 362 aaPredicted RBP13.72□□□□□ -0.21
NPHP4-203ENST00000378169 UBP1Q9NZI7 540 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 KCNH4Q9UQ05 1017 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 NAALADL1Q9UQQ1 740 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 MYH2Q9UKX2 1941 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 CASZ1Q86V15 1759 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 ZNF862O60290 1169 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 RECQL4O94761 1208 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 CHEK2O96017 543 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 GHRP10912 638 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 RECQLP46063 649 aaPredicted RBP13.72□□□□□ -0.21
NPHP4-203ENST00000378169 MARSP56192 900 aaKnown RBP13.72□□□□□ -0.21
NPHP4-203ENST00000378169 FSCBQ5H9T9 825 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 DENND1BQ6P3S1 775 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 SLC27A1Q6PCB7 646 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 SLFN11Q7Z7L1 901 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 PRELID2Q8N945 189 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 VCPIP1Q96JH7 1222 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 CDT1Q9H211 546 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 LOC100653049A0A140TA62 436 aa13.72□□□□□ -0.21
NPHP4-203ENST00000378169 E5RI56 91 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms