RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 FAM162AQ96A26 154 aa16.51■□□□□ 0.23
COL17A1-202ENST00000369733 CASS4Q9NQ75 786 aa16.51■□□□□ 0.23
COL17A1-202ENST00000369733 NDFIP2Q9NV92 336 aa16.51■□□□□ 0.23
COL17A1-202ENST00000369733 VCAM1P19320 739 aa16.51■□□□□ 0.23
COL17A1-202ENST00000369733 PTDSS1P48651 473 aaKnown RBP16.51■□□□□ 0.23
COL17A1-202ENST00000369733 TCHHL1Q5QJ38 904 aaPredicted RBP16.51■□□□□ 0.23
COL17A1-202ENST00000369733 SDR42E2A6NKP2 422 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 RAG1P15918 1043 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 TGM2P21980 687 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 LPCAT2Q7L5N7 544 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 TMC2Q8TDI7 906 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 PARD3BQ8TEW8 1205 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 SATB2Q9UPW6 733 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 ADRA1DP25100 572 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 SSTR1P30872 391 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 RPA3P35244 121 aaPredicted RBP16.5■□□□□ 0.23
COL17A1-202ENST00000369733 CLK1P49759 484 aaKnown RBP16.5■□□□□ 0.23
COL17A1-202ENST00000369733 DEFA1P59665 94 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 DEFA3P59666 94 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 MYBPC2Q14324 1141 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 ZNF235Q14590 738 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 QPCTQ16769 361 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 BTBD8Q5XKL5 378 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 RMDN1Q96DB5 314 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 MMADHCQ9H3L0 296 aaPredicted RBP16.5■□□□□ 0.23
COL17A1-202ENST00000369733 IL17RBQ9NRM6 502 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 SCN3BQ9NY72 215 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 PDGFRBP09619 1106 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 PEX5P50542 639 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 TRIM60Q495X7 471 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 CCNJLQ8IV13 435 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 ACTL9Q8TC94 416 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 APBB2Q92870 758 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 CHST7Q9NS84 486 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 RNF225M0QZC1 329 aaPredicted RBP16.5■□□□□ 0.23
COL17A1-202ENST00000369733 SLC45A4Q5BKX6 768 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 ATF7IP2Q5U623 682 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 BAP1Q92560 729 aa16.5■□□□□ 0.23
COL17A1-202ENST00000369733 WDR47O94967 919 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 AVPR1AP37288 418 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 PTK2BQ14289 1009 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 IPMKQ8NFU5 416 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 CALML6Q8TD86 181 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 AGBL1Q96MI9 1066 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 C17orf80Q9BSJ5 609 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 HNRNPCL2B2RXH8 293 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 NUDT17P0C025 328 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 ALADP13716 330 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 CPA3P15088 417 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 ELK3P41970 407 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 MTMR2Q13614 643 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 CCDC60Q8IWA6 550 aaPredicted RBP16.49■□□□□ 0.23
COL17A1-202ENST00000369733 TTLL6Q8N841 843 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 APPL2Q8NEU8 664 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 MAML3Q96JK9 1138 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 BTNL10A8MVZ5 291 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 SUPT3HB4E1H0 165 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 AHCYL1O43865 530 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 HLA-DPA1P20036 260 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 PRKCIP41743 596 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 SEZ6Q53EL9 994 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 SZRD1Q7Z422 152 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 ZCCHC9Q8N567 271 aaKnown RBP16.49■□□□□ 0.23
COL17A1-202ENST00000369733 TERB1Q8NA31 727 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 TDRD5Q8NAT2 981 aaKnown RBP16.49■□□□□ 0.23
COL17A1-202ENST00000369733 ZFRQ96KR1 1074 aaKnown RBP16.49■□□□□ 0.23
COL17A1-202ENST00000369733 TMEM79Q9BSE2 394 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 TRIM62Q9BVG3 475 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 AFF4Q9UHB7 1163 aaKnown RBP16.49■□□□□ 0.23
COL17A1-202ENST00000369733 NWD1Q149M9 1564 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 ARP10275 920 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 NFKBIAP25963 317 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 IFNA8P32881 189 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 NPTX2P47972 431 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 CYP24A1Q07973 514 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 IQCKQ8N0W5 287 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 LZICQ8WZA0 190 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 USP13Q92995 863 aaPredicted RBP16.49■□□□□ 0.23
COL17A1-202ENST00000369733 SRPK1Q96SB4 655 aaKnown RBP16.49■□□□□ 0.23
COL17A1-202ENST00000369733 TBC1D10AQ9BXI6 508 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 SLC1A6P48664 564 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 NAPEPLDQ6IQ20 393 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 MICU2Q8IYU8 434 aa16.49■□□□□ 0.23
COL17A1-202ENST00000369733 RUVBL2Q9Y230 463 aaKnown RBP16.49■□□□□ 0.23
COL17A1-202ENST00000369733 CLTCQ00610 1675 aaKnown RBP16.48■□□□□ 0.23
COL17A1-202ENST00000369733 SHOX2O60902 331 aaPredicted RBP16.48■□□□□ 0.23
COL17A1-202ENST00000369733 ENTPD3O75355 529 aa16.48■□□□□ 0.23
COL17A1-202ENST00000369733 TNFAIP8O95379 198 aa16.48■□□□□ 0.23
COL17A1-202ENST00000369733 PDK2Q15119 407 aa16.48■□□□□ 0.23
COL17A1-202ENST00000369733 PCSK7Q16549 785 aa16.48■□□□□ 0.23
COL17A1-202ENST00000369733 KIZQ2M2Z5 673 aa16.48■□□□□ 0.23
COL17A1-202ENST00000369733 ZBTB49Q6ZSB9 765 aa16.48■□□□□ 0.23
COL17A1-202ENST00000369733 KCNK18Q7Z418 384 aa16.48■□□□□ 0.23
COL17A1-202ENST00000369733 KYQ8NBH2 561 aa16.48■□□□□ 0.23
COL17A1-202ENST00000369733 ZNF518BQ9C0D4 1074 aa16.48■□□□□ 0.23
COL17A1-202ENST00000369733 CORO1CQ9ULV4 474 aaPredicted RBP16.48■□□□□ 0.23
COL17A1-202ENST00000369733 MYO1DO94832 1006 aa16.48■□□□□ 0.23
COL17A1-202ENST00000369733 MLH1P40692 756 aa16.48■□□□□ 0.23
COL17A1-202ENST00000369733 IREB2P48200 963 aaKnown RBP16.48■□□□□ 0.23
COL17A1-202ENST00000369733 FAM83EQ2M2I3 478 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms