RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 CEP295NLQ96MC4 621 aa19.56■□□□□ 0.72
CLN3-202ENST00000355477 ELOVL4Q9GZR5 314 aa19.56■□□□□ 0.72
CLN3-202ENST00000355477 TRPC7Q9HCX4 862 aa19.56■□□□□ 0.72
CLN3-202ENST00000355477 GKN1Q9NS71 199 aa19.56■□□□□ 0.72
CLN3-202ENST00000355477 HOOK1Q9UJC3 728 aaKnown RBP19.56■□□□□ 0.72
CLN3-202ENST00000355477 MRPS17Q9Y2R5 130 aaKnown RBP19.56■□□□□ 0.72
CLN3-202ENST00000355477 FAM186AA6NE01 2351 aa19.55■□□□□ 0.72
CLN3-202ENST00000355477 TRIM49BA6NDI0 452 aa19.55■□□□□ 0.72
CLN3-202ENST00000355477 KINO60870 393 aaKnown RBP19.55■□□□□ 0.72
CLN3-202ENST00000355477 CD44P16070 742 aaKnown RBP19.55■□□□□ 0.72
CLN3-202ENST00000355477 PTPRZ1P23471 2315 aaPredicted RBP19.55■□□□□ 0.72
CLN3-202ENST00000355477 CCNE1P24864 410 aa19.55■□□□□ 0.72
CLN3-202ENST00000355477 NBL1P41271 181 aa19.55■□□□□ 0.72
CLN3-202ENST00000355477 KPNA1P52294 538 aaPredicted RBP19.55■□□□□ 0.72
CLN3-202ENST00000355477 NDST1P52848 882 aa19.55■□□□□ 0.72
CLN3-202ENST00000355477 MLLT6P55198 1093 aaPredicted RBP19.55■□□□□ 0.72
CLN3-202ENST00000355477 NOP14P78316 857 aaKnown RBP19.55■□□□□ 0.72
CLN3-202ENST00000355477 FRMD5Q7Z6J6 570 aa19.55■□□□□ 0.72
CLN3-202ENST00000355477 ZC3H3Q8IXZ2 948 aaKnown RBP19.55■□□□□ 0.72
CLN3-202ENST00000355477 ARL14EPQ8N8R7 260 aaPredicted RBP19.55■□□□□ 0.72
CLN3-202ENST00000355477 KCNK16Q96T55 309 aa19.55■□□□□ 0.72
CLN3-202ENST00000355477 TTLL2Q9BWV7 592 aa19.55■□□□□ 0.72
CLN3-202ENST00000355477 TMEM8AQ9HCN3 771 aa19.55■□□□□ 0.72
CLN3-202ENST00000355477 GCNT4Q9P109 453 aa19.55■□□□□ 0.72
CLN3-202ENST00000355477 MAN1B1Q9UKM7 699 aa19.55■□□□□ 0.72
CLN3-202ENST00000355477 FRYLO94915 3013 aa19.55■□□□□ 0.72
CLN3-202ENST00000355477 PROB1E7EW31 1015 aa19.54■□□□□ 0.72
CLN3-202ENST00000355477 BMP6P22004 513 aa19.54■□□□□ 0.72
CLN3-202ENST00000355477 GTF2H1P32780 548 aa19.54■□□□□ 0.72
CLN3-202ENST00000355477 RPS9P46781 194 aaKnown RBP19.54■□□□□ 0.72
CLN3-202ENST00000355477 PLCB2Q00722 1185 aa19.54■□□□□ 0.72
CLN3-202ENST00000355477 ZNF268Q14587 947 aaPredicted RBP19.54■□□□□ 0.72
CLN3-202ENST00000355477 FUKQ8N0W3 1084 aa19.54■□□□□ 0.72
CLN3-202ENST00000355477 CRYBG2Q8N1P7 616 aa19.54■□□□□ 0.72
CLN3-202ENST00000355477 C12orf29Q8N999 325 aa19.54■□□□□ 0.72
CLN3-202ENST00000355477 SEMA4DQ92854 862 aa19.54■□□□□ 0.72
CLN3-202ENST00000355477 TNIP3Q96KP6 325 aa19.54■□□□□ 0.72
CLN3-202ENST00000355477 FAM83CQ9BQN1 747 aa19.54■□□□□ 0.72
CLN3-202ENST00000355477 MED10Q9BTT4 135 aa19.54■□□□□ 0.72
CLN3-202ENST00000355477 SPATA6Q9NWH7 488 aaPredicted RBP19.54■□□□□ 0.72
CLN3-202ENST00000355477 THG1LQ9NWX6 298 aaKnown RBP19.54■□□□□ 0.72
CLN3-202ENST00000355477 ZNF292O60281 2723 aa19.54■□□□□ 0.72
CLN3-202ENST00000355477 TRAV19A0A0A6YYK7 116 aa19.53■□□□□ 0.72
CLN3-202ENST00000355477 OTOL1A6NHN0 477 aaPredicted RBP19.53■□□□□ 0.72
CLN3-202ENST00000355477 NCAM2O15394 837 aa19.53■□□□□ 0.72
CLN3-202ENST00000355477 USP17L7P0C7H9 530 aa19.53■□□□□ 0.72
CLN3-202ENST00000355477 SP9P0CG40 484 aa19.53■□□□□ 0.72
CLN3-202ENST00000355477 EPB41P11171 864 aaKnown RBP19.53■□□□□ 0.72
CLN3-202ENST00000355477 CCDC130P13994 396 aa19.53■□□□□ 0.72
CLN3-202ENST00000355477 FKBP3Q00688 224 aaKnown RBP19.53■□□□□ 0.72
CLN3-202ENST00000355477 WDR44Q5JSH3 913 aa19.53■□□□□ 0.72
CLN3-202ENST00000355477 KRT39Q6A163 491 aa19.53■□□□□ 0.72
CLN3-202ENST00000355477 TRIM68Q6AZZ1 485 aa19.53■□□□□ 0.72
CLN3-202ENST00000355477 TXNDC11Q6PKC3 985 aa19.53■□□□□ 0.72
CLN3-202ENST00000355477 FAM35AQ86V20 835 aa19.53■□□□□ 0.72
CLN3-202ENST00000355477 UNC93AQ86WB7 457 aa19.53■□□□□ 0.72
CLN3-202ENST00000355477 TWNKQ96RR1 684 aa19.53■□□□□ 0.72
CLN3-202ENST00000355477 TSG101Q99816 390 aa19.53■□□□□ 0.72
CLN3-202ENST00000355477 C8orf33Q9H7E9 229 aaPredicted RBP19.53■□□□□ 0.72
CLN3-202ENST00000355477 KIF9Q9HAQ2 790 aa19.53■□□□□ 0.72
CLN3-202ENST00000355477 LMAN1LQ9HAT1 526 aa19.53■□□□□ 0.72
CLN3-202ENST00000355477 HPS4Q9NQG7 708 aa19.53■□□□□ 0.72
CLN3-202ENST00000355477 TRPM5Q9NZQ8 1165 aa19.53■□□□□ 0.72
CLN3-202ENST00000355477 MYOFQ9NZM1 2061 aa19.53■□□□□ 0.72
CLN3-202ENST00000355477 CFAP54Q96N23 3096 aa19.53■□□□□ 0.72
CLN3-202ENST00000355477 ZNF840PA6NDX5 716 aa19.52■□□□□ 0.72
CLN3-202ENST00000355477 SPECC1L-ADORA2AF8WAN1 911 aa19.52■□□□□ 0.72
CLN3-202ENST00000355477 CKMP06732 381 aa19.52■□□□□ 0.72
CLN3-202ENST00000355477 CHRNB1P11230 501 aa19.52■□□□□ 0.72
CLN3-202ENST00000355477 HDCP19113 662 aa19.52■□□□□ 0.72
CLN3-202ENST00000355477 CTHP32929 405 aa19.52■□□□□ 0.72
CLN3-202ENST00000355477 MAGEA9P43362 315 aa19.52■□□□□ 0.72
CLN3-202ENST00000355477 INCA1Q0VD86 236 aa19.52■□□□□ 0.72
CLN3-202ENST00000355477 IFRD2Q12894 506 aaPredicted RBP19.52■□□□□ 0.72
CLN3-202ENST00000355477 TAF10Q12962 218 aa19.52■□□□□ 0.72
CLN3-202ENST00000355477 NUP93Q8N1F7 819 aa19.52■□□□□ 0.72
CLN3-202ENST00000355477 SCAMP5Q8TAC9 235 aa19.52■□□□□ 0.72
CLN3-202ENST00000355477 SLC2A14Q8TDB8 520 aa19.52■□□□□ 0.72
CLN3-202ENST00000355477 GTPBP4Q9BZE4 634 aaKnown RBP19.52■□□□□ 0.72
CLN3-202ENST00000355477 IMPG2Q9BZV3 1241 aa19.52■□□□□ 0.72
CLN3-202ENST00000355477 NIF3L1Q9GZT8 377 aa19.52■□□□□ 0.72
CLN3-202ENST00000355477 EBF3Q9H4W6 596 aa19.52■□□□□ 0.72
CLN3-202ENST00000355477 EP300Q09472 2414 aaPredicted RBP19.52■□□□□ 0.71
CLN3-202ENST00000355477 MYO16Q9Y6X6 1858 aa19.52■□□□□ 0.71
CLN3-202ENST00000355477 PPP1R3GB7ZBB8 358 aa19.51■□□□□ 0.71
CLN3-202ENST00000355477 TNFRSF10BO14763 440 aa19.51■□□□□ 0.71
CLN3-202ENST00000355477 SLC16A3O15427 465 aaKnown RBP19.51■□□□□ 0.71
CLN3-202ENST00000355477 AP1G2O75843 785 aa19.51■□□□□ 0.71
CLN3-202ENST00000355477 BEST1O76090 585 aa19.51■□□□□ 0.71
CLN3-202ENST00000355477 ZXDBP98169 803 aa19.51■□□□□ 0.71
CLN3-202ENST00000355477 LRRC63Q05C16 580 aa19.51■□□□□ 0.71
CLN3-202ENST00000355477 MTAPQ13126 283 aa19.51■□□□□ 0.71
CLN3-202ENST00000355477 ZNF77Q15935 545 aa19.51■□□□□ 0.71
CLN3-202ENST00000355477 ITPRIPL2Q3MIP1 535 aa19.51■□□□□ 0.71
CLN3-202ENST00000355477 CBWD6Q4V339 395 aa19.51■□□□□ 0.71
CLN3-202ENST00000355477 CBWD3Q5JTY5 395 aa19.51■□□□□ 0.71
CLN3-202ENST00000355477 CBWD5Q5RIA9 395 aa19.51■□□□□ 0.71
CLN3-202ENST00000355477 RALGPS2Q86X27 583 aaPredicted RBP19.51■□□□□ 0.71
CLN3-202ENST00000355477 TTC16Q8NEE8 873 aa19.51■□□□□ 0.71
CLN3-202ENST00000355477 ZMIZ2Q8NF64 920 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms