RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 APEX2Q9UBZ4 518 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 NSFL1CQ9UNZ2 370 aaKnown RBP13.04□□□□□ -0.32
COL6A3-203ENST00000353578 MAPKAPK2P49137 400 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 HPCAP84074 193 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 MROH9Q5TGP6 573 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 RFC4P35249 363 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 TTLL12Q14166 644 aaPredicted RBP13.04□□□□□ -0.32
COL6A3-203ENST00000353578 ZNF790Q6PG37 636 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 ZDHHC13Q8IUH4 622 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 PLCL2Q9UPR0 1127 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 ITGAXP20702 1163 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 RBM17Q96I25 401 aaKnown RBP13.04□□□□□ -0.32
COL6A3-203ENST00000353578 SLC25A23Q9BV35 468 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 UBA6A0AVT1 1052 aaPredicted RBP13.04□□□□□ -0.32
COL6A3-203ENST00000353578 PHKA1P46020 1223 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 PSMD4P55036 377 aaKnown RBP13.04□□□□□ -0.32
COL6A3-203ENST00000353578 POU5F1BQ06416 359 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 PRKAA1Q13131 559 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 SLC5A9Q2M3M2 681 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 ANO4Q32M45 955 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 HAUS6Q7Z4H7 955 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 ARL10Q8N8L6 244 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 SLC35G2Q8TBE7 412 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 EHD3Q9NZN3 535 aa13.04□□□□□ -0.32
COL6A3-203ENST00000353578 PIK3CDO00329 1044 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 UGT3A1Q6NUS8 523 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 TRIM65Q6PJ69 517 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 METTL23Q86XA0 190 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 DEFB107AQ8IZN7 70 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 GOLPH3Q9H4A6 298 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 PCMTD2Q9NV79 361 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 SLC12A4Q9UP95 1085 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 SEMA3DO95025 777 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 GRK3P35626 688 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 RGS4P49798 205 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 INO80DQ53TQ3 878 aaPredicted RBP13.03□□□□□ -0.32
COL6A3-203ENST00000353578 FAM20AQ96MK3 541 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 C7orf25Q9BPX7 421 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 SLC6A15Q9H2J7 730 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 H3BQF6 201 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 EXTL3O43909 919 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 DENND5AQ6IQ26 1287 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 TMC3Q7Z5M5 1100 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 CNKSR1Q969H4 720 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 CYP2D7A0A087X1C5 515 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 TEX46H3BTG2 121 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 RBP1P09455 135 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 FAUP35544 74 aaKnown RBP13.03□□□□□ -0.32
COL6A3-203ENST00000353578 ARCQ7LC44 396 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 GPHNQ9NQX3 736 aaPredicted RBP13.03□□□□□ -0.32
COL6A3-203ENST00000353578 LOC110117498-PIK3R3F6TDL0 507 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 PI4K2BG5E9Z4 385 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 SSNA1O43805 119 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 IL13P35225 146 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 EIF3EP60228 445 aaKnown RBP13.03□□□□□ -0.32
COL6A3-203ENST00000353578 VBP1P61758 197 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 BNIP2Q12982 314 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 RAB2BQ8WUD1 216 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 PIK3R3Q92569 461 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 PRPF19Q9UMS4 504 aaKnown RBP13.03□□□□□ -0.32
COL6A3-203ENST00000353578 C3orf70A6NLC5 250 aaPredicted RBP13.03□□□□□ -0.32
COL6A3-203ENST00000353578 UQCRBP14927 111 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 HOXB8P17481 243 aaPredicted RBP13.03□□□□□ -0.32
COL6A3-203ENST00000353578 RCVRNP35243 200 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 CDK16Q00536 496 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 PDK1Q15118 436 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 ERMARDQ5T6L9 678 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 RDM1Q8NG50 284 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 PTPRN2Q92932 1015 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 AGPAT1Q99943 283 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 C3orf18Q9UK00 162 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 NIP7Q9Y221 180 aaKnown RBP eCLIP13.03□□□□□ -0.32
COL6A3-203ENST00000353578 DHFRP00374 187 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 CFBP00751 764 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 PTENP60484 403 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 DNAAF5Q86Y56 855 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 DEPDC4Q8N2C3 294 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 CASKIN2Q8WXE0 1202 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 HPS4Q9NQG7 708 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 POLG2Q9UHN1 485 aa13.03□□□□□ -0.32
COL6A3-203ENST00000353578 ZNF667Q5HYK9 610 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 APOPT1Q96IL0 206 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 ZNF333Q96JL9 665 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 FAM167AQ96KS9 214 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 EIF3LQ9Y262 564 aaKnown RBP13.02□□□□□ -0.32
COL6A3-203ENST00000353578 UNC13AQ9UPW8 1703 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 MLH3Q9UHC1 1453 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 RHOBTB3O94955 611 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 HSD17B4P51659 736 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 RPS6P62753 249 aaKnown RBP13.02□□□□□ -0.32
COL6A3-203ENST00000353578 COASYQ13057 564 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 SH3BP5LQ7L8J4 393 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 REXO1L1PQ8IX06 675 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 NAT14Q8WUY8 206 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 ITPKCQ96DU7 683 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 ADCY10Q96PN6 1610 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 PNMA6FA0A0J9YX94 578 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 IFNGR2P38484 337 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 HNMTP50135 292 aa13.02□□□□□ -0.32
COL6A3-203ENST00000353578 MAPK11Q15759 364 aa13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms