RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 DUS1LQ6P1R4 473 aaKnown RBP8.79□□□□□ -1
HMGB1-203ENST00000341423 TTC7BQ86TV6 843 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 RNF135Q8IUD6 432 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 GALNT15Q8N3T1 639 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 BEND7Q8N7W2 519 aaPredicted RBP8.79□□□□□ -1
HMGB1-203ENST00000341423 NIFKQ9BYG3 293 aaKnown RBP8.79□□□□□ -1
HMGB1-203ENST00000341423 SPASTQ9UBP0 616 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 PRKAG3Q9UGI9 489 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 SCINQ9Y6U3 715 aa8.79□□□□□ -1
HMGB1-203ENST00000341423 SLC38A8A6NNN8 435 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 CAVIN2O95810 425 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 CHEK2O96017 543 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 PSMC3P17980 439 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 LAMTOR4Q0VGL1 99 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 HDAC1Q13547 482 aaPredicted RBP8.78□□□□□ -1
HMGB1-203ENST00000341423 PGM5Q15124 567 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 TTLL9Q3SXZ7 439 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 FAM102AQ5T9C2 384 aaPredicted RBP8.78□□□□□ -1
HMGB1-203ENST00000341423 SLC30A10Q6XR72 485 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 RAPH1Q70E73 1250 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 DCLK2Q8N568 766 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 SH2D3AQ9BRG2 576 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 CCDC86Q9H6F5 360 aaKnown RBP8.78□□□□□ -1
HMGB1-203ENST00000341423 CAPN10Q9HC96 672 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 FRMD4AQ9P2Q2 1039 aaPredicted RBP8.78□□□□□ -1
HMGB1-203ENST00000341423 ERVK-11Q9UQG0 969 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 ZNF609O15014 1411 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 LRCH4O75427 683 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 ZBED1O96006 694 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 PRNPP04156 253 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 TBX4P57082 545 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 KHDRBS2Q5VWX1 349 aaKnown RBP8.78□□□□□ -1
HMGB1-203ENST00000341423 ANGPTL8Q6UXH0 198 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 DLK2Q6UY11 383 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 DEFB119Q8N690 84 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 LENG1Q96BZ8 264 aaPredicted RBP8.78□□□□□ -1
HMGB1-203ENST00000341423 PPP1R2P1Q96PQ5 205 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 ASIC3Q9UHC3 531 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 PADI2Q9Y2J8 665 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 KIF1AQ12756 1690 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 ZC3H13Q5T200 1668 aaKnown RBP8.78□□□□□ -1
HMGB1-203ENST00000341423 ITGBL1O95965 494 aaPredicted RBP8.78□□□□□ -1
HMGB1-203ENST00000341423 NDUFV2P19404 249 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 PBLDP30039 288 aaPredicted RBP8.78□□□□□ -1
HMGB1-203ENST00000341423 PHBP35232 272 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 PPP3CCP48454 512 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 ACOT2P49753 483 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 RGS4P49798 205 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 TPD52P55327 224 aaPredicted RBP8.78□□□□□ -1
HMGB1-203ENST00000341423 PSMC1P62191 440 aaKnown RBP8.78□□□□□ -1
HMGB1-203ENST00000341423 OCA2Q04671 838 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 FAM160A1Q05DH4 1040 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 SNW1Q13573 536 aaKnown RBP8.78□□□□□ -1
HMGB1-203ENST00000341423 LONRF2Q1L5Z9 754 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 EPC2Q52LR7 807 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 SFMBT2Q5VUG0 894 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 PTRHD1Q6GMV3 140 aaKnown RBP8.78□□□□□ -1
HMGB1-203ENST00000341423 CCDC25Q86WR0 208 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 PHYKPLQ8IUZ5 450 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 TRIM58Q8NG06 486 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 SMARCD1Q96GM5 515 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 TMEM175Q9BSA9 504 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 EDEM2Q9BV94 578 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 FBRSL1Q9HCM7 1045 aaKnown RBP8.78□□□□□ -1
HMGB1-203ENST00000341423 THSD1Q9NS62 852 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 KRT82Q9NSB4 513 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 LCMT1Q9UIC8 334 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 SH2B2O14492 632 aaPredicted RBP8.78□□□□□ -1
HMGB1-203ENST00000341423 KRT86O43790 486 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 TOM1L1O75674 476 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 ITGB3P05106 788 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 ERCC1P07992 297 aaPredicted RBP8.78□□□□□ -1
HMGB1-203ENST00000341423 WEE2P0C1S8 567 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 IQCF3P0C7M6 154 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 NDST1P52848 882 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 COL9A3Q14050 684 aaPredicted RBP8.78□□□□□ -1
HMGB1-203ENST00000341423 ANKRD40Q6AI12 368 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 KLC3Q6P597 504 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 GPR156Q8NFN8 814 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 GRIN3AQ8TCU5 1115 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 LPPQ93052 612 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 ADAM7Q9H2U9 754 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 ATP13A1Q9HD20 1204 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 SLTMQ9NWH9 1034 aaKnown RBP eCLIP8.78□□□□□ -1
HMGB1-203ENST00000341423 KCTD5Q9NXV2 234 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 FAM198AQ9UFP1 575 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 INVSQ9Y283 1065 aa8.78□□□□□ -1
HMGB1-203ENST00000341423 SERPINA4P29622 427 aa8.77□□□□□ -1
HMGB1-203ENST00000341423 CPA2P48052 419 aa8.77□□□□□ -1
HMGB1-203ENST00000341423 VCPP55072 806 aaKnown RBP8.77□□□□□ -1
HMGB1-203ENST00000341423 CAP1Q01518 475 aa8.77□□□□□ -1
HMGB1-203ENST00000341423 NSUN2Q08J23 767 aaKnown RBP eCLIP8.77□□□□□ -1
HMGB1-203ENST00000341423 CAVIN1Q6NZI2 390 aaKnown RBP8.77□□□□□ -1
HMGB1-203ENST00000341423 MTHFD1LQ6UB35 978 aa8.77□□□□□ -1
HMGB1-203ENST00000341423 P4HA3Q7Z4N8 544 aa8.77□□□□□ -1
HMGB1-203ENST00000341423 SYCE1Q8N0S2 351 aa8.77□□□□□ -1
HMGB1-203ENST00000341423 LSMEM2Q8N112 164 aa8.77□□□□□ -1
HMGB1-203ENST00000341423 TPCN2Q8NHX9 752 aa8.77□□□□□ -1
HMGB1-203ENST00000341423 TRAPPC12Q8WVT3 735 aa8.77□□□□□ -1
HMGB1-203ENST00000341423 CLIP3Q96DZ5 547 aa8.77□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms