RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 HNRNPCP07910 306 aaKnown RBP eCLIP14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 CDK4P11802 303 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 CIITAP33076 1130 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 CCNIQ14094 377 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 NADK2Q4G0N4 442 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 TMCO4Q5TGY1 634 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 KRT39Q6A163 491 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 ARPINQ7Z6K5 226 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 EXD1Q8NHP7 514 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 DGCR14Q96DF8 476 aaKnown RBP14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 CCDC106Q9BWC9 280 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 FOXP3Q9BZS1 431 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 ACSS3Q9H6R3 686 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 UBAP1Q9NZ09 502 aa14.05□□□□□ -0.16
CCDC88C-201ENST00000331194 P4HA2O15460 535 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 TMCC1O94876 653 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 DESP17661 470 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 CPOXP36551 454 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 PRELPP51888 382 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 PEX3P56589 373 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 ZNF200P98182 395 aaPredicted RBP14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 TLR1Q15399 786 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 CHI3L2Q15782 390 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 DOK7Q18PE1 504 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 SV2AQ7L0J3 742 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 LARGE2Q8N3Y3 721 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 ATP11CQ8NB49 1132 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 ZFP28Q8NHY6 868 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 DHRS4Q9BTZ2 278 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 CNTN3Q9P232 1028 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 SERPINA10Q9UK55 444 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 APPL1Q9UKG1 709 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 MMP10P09238 476 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 CHN2P52757 468 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 TBL3Q12788 808 aaKnown RBP14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 GRM2Q14416 872 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 ACAP1Q15027 740 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 IYDQ6PHW0 289 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 HAUS6Q7Z4H7 955 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 MIPOL1Q8TD10 442 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 HSPBAP1Q96EW2 488 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 PRICKLE1Q96MT3 831 aaPredicted RBP14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 SRPK1Q96SB4 655 aaKnown RBP14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 GLT8D2Q9H1C3 349 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 SSU72Q9NP77 194 aaKnown RBP14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 FRMD4AQ9P2Q2 1039 aaPredicted RBP14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 PSTPIP1O43586 416 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 SUPT3HO75486 399 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 STIP1P31948 543 aaKnown RBP14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 ADARP55265 1226 aaKnown RBP14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 PSMC5P62195 406 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 OASLQ15646 514 aaKnown RBP14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 EFHC1Q5JVL4 640 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 CCDC174Q6PII3 467 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 POTEAQ6S8J7 498 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 MON1BQ7L1V2 547 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 DEFB132Q7Z7B7 95 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 SIAH1Q8IUQ4 282 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 ACCSQ96QU6 501 aa14.04□□□□□ -0.16
CCDC88C-201ENST00000331194 UBE4BO95155 1302 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 LOC100653049A0A140TA62 436 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 A0A1B0GTW7 788 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 KRT34O76011 436 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 RAG1P15918 1043 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 GTF2H1P32780 548 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 VCPP55072 806 aaKnown RBP14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 PLOD1Q02809 727 aaPredicted RBP14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 BMPR2Q13873 1038 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 HIC1Q14526 733 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 SMTNL2Q2TAL5 461 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 SH2D5Q6ZV89 423 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 HPS6Q86YV9 775 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 FBXL13Q8NEE6 735 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 APOPT1Q96IL0 206 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 LIN28AQ9H9Z2 209 aaKnown RBP14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 PCDHAC2Q9Y5I4 1007 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 AK5Q9Y6K8 562 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 UGT1A9O60656 530 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 GDF11O95390 407 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 PROCP04070 461 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 PHBP35232 272 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 ELK3P41970 407 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 SOX10P56693 466 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 MYLK3Q32MK0 819 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 RABGAP1LQ5R372 815 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 SCARA3Q6AZY7 606 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 TMC7Q7Z402 723 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 CTAGE3PQ8IX95 158 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 RIN3Q8TB24 985 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 PRPF31Q8WWY3 499 aaKnown RBP14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 APOL6Q9BWW8 343 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 UGT1A7Q9HAW7 530 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 UGT1A10Q9HAW8 530 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 UGT1A8Q9HAW9 530 aa14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 AVENQ9NQS1 362 aaPredicted RBP14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 FARP1Q9Y4F1 1045 aaPredicted RBP14.03□□□□□ -0.16
CCDC88C-201ENST00000331194 SPOCD1Q6ZMY3 1216 aa14.02□□□□□ -0.16
CCDC88C-201ENST00000331194 CHSY1Q86X52 802 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms