RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 PEX1O43933 1283 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 SRGAP2O75044 1071 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 RASAL1O95294 804 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 TNFRSF1AP19438 455 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 PRKAR1BP31321 381 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 FOLR3P41439 243 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 HNRNPMP52272 730 aaKnown RBP eCLIP4.01□□□□□ -1.77
HMGB1-201ENST00000326004 MAPK10P53779 464 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 BCAT1P54687 386 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 FSTL1Q12841 308 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 CCNIQ14094 377 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 PUM1Q14671 1186 aaKnown RBP eCLIP4.01□□□□□ -1.77
HMGB1-201ENST00000326004 RRAGBQ5VZM2 374 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 SYTL1Q8IYJ3 562 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 TOR1AIP2Q8NFQ8 470 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 MYCBPAPQ8TBZ2 947 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 OSCP1Q8WVF1 389 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 ATRIPQ8WXE1 791 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 ATG4AQ8WYN0 398 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 LINC00476Q8WZB0 136 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 LRRC46Q96FV0 321 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 TMEM41AQ96HV5 264 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 SNX27Q96L92 541 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 Q96MF0 132 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 PSMD1Q99460 953 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 GDF15Q99988 308 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 STK33Q9BYT3 514 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 WDR12Q9GZL7 423 aaKnown RBP4.01□□□□□ -1.77
HMGB1-201ENST00000326004 KLC4Q9NSK0 619 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 SH2B3Q9UQQ2 575 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 MAN2B2Q9Y2E5 1009 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 PCDHGB2Q9Y5G2 931 aa4.01□□□□□ -1.77
HMGB1-201ENST00000326004 COL4A3Q01955 1670 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 TMEM191CA6NGB0 347 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 F5H423 210 aaPredicted RBP4□□□□□ -1.77
HMGB1-201ENST00000326004 PPM1DO15297 605 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 TPD52L2O43399 206 aaKnown RBP4□□□□□ -1.77
HMGB1-201ENST00000326004 PLA2G6O60733 806 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 NXPH3O95157 252 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 ONECUT2O95948 504 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 TACR2P21452 398 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 EPHA3P29320 983 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 ATXN1P54253 815 aaKnown RBP4□□□□□ -1.77
HMGB1-201ENST00000326004 TNFAIP2Q03169 654 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 CHAF1AQ13111 956 aaPredicted RBP4□□□□□ -1.77
HMGB1-201ENST00000326004 STK3Q13188 491 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 MPP3Q13368 585 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 STARD3Q14849 445 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 ZNF618Q5T7W0 954 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 KIAA0895LQ68EN5 471 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 FBXO38Q6PIJ6 1188 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 Q6YL49 198 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 DBX2Q6ZNG2 339 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 Q6ZNX1 250 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 KCTD20Q7Z5Y7 419 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 ULK2Q8IYT8 1036 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 ABRAQ8N0Z2 381 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 SUPT20HQ8NEM7 779 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 DNAJB14Q8TBM8 379 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 SLC9A6Q92581 669 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 FKBP10Q96AY3 582 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 FBXL20Q96IG2 436 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 PBKQ96KB5 322 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 FAM227BQ96M60 508 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 PRRX2Q99811 253 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 TTLL2Q9BWV7 592 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 GLOD4Q9HC38 313 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 ZBTB26Q9HCK0 441 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 NECTIN3Q9NQS3 549 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 GJB4Q9NTQ9 266 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 SYBUQ9NX95 663 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 EHD3Q9NZN3 535 aa4□□□□□ -1.77
HMGB1-201ENST00000326004 FNDC1Q4ZHG4 1894 aaPredicted RBP4□□□□□ -1.77
HMGB1-201ENST00000326004 ADGRA2Q96PE1 1338 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 A0A087WZ62 844 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 WDR27A2RRH5 827 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 CCDC151A5D8V7 595 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 GOLGA6L3A6NEY3 463 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 ORC4O43929 436 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 FZD7O75084 574 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 EIF3JO75822 258 aaKnown RBP3.99□□□□□ -1.77
HMGB1-201ENST00000326004 ESRRBO95718 433 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 GABRB3P28472 473 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 ADORA2AP29274 412 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 IL6STP40189 918 aaPredicted RBP3.99□□□□□ -1.77
HMGB1-201ENST00000326004 ITGA8P53708 1063 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 TIAL1Q01085 375 aaKnown RBP eCLIP3.99□□□□□ -1.773e-6■■■■□ 21.9
HMGB1-201ENST00000326004 GRM1Q13255 1194 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 BMPR2Q13873 1038 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 PTCHD3Q3KNS1 767 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 C10orf62Q5T681 223 aaPredicted RBP3.99□□□□□ -1.77
HMGB1-201ENST00000326004 DEPDC1Q5TB30 811 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 MANEALQ5VSG8 457 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 ARL6IP4Q66PJ3 421 aaKnown RBP3.99□□□□□ -1.77
HMGB1-201ENST00000326004 MRNIPQ6NTE8 343 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 PGBD2Q6P3X8 592 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 CRTC1Q6UUV9 634 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 TSHZ1Q6ZSZ6 1077 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 KIAA0408Q6ZU52 694 aa3.99□□□□□ -1.77
HMGB1-201ENST00000326004 USP51Q70EK9 711 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms