RNA–Protein interactions for RNA: ENST00000304494.9

CDKN2A-201, Transcript of cyclin dependent kinase inhibitor 2A, humanhuman

TSL 1 (best) BASIC

Gene CDKN2A, Length 1,218 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN2A-201ENST00000304494 TRPM5Q9NZQ8 1165 aa28.11■■■□□ 2.09
CDKN2A-201ENST00000304494 NDRG2Q9UN36 371 aaKnown RBP28.11■■■□□ 2.09
CDKN2A-201ENST00000304494 CCL26Q9Y258 94 aa28.11■■■□□ 2.09
CDKN2A-201ENST00000304494 PTPRDP23468 1912 aa28.11■■■□□ 2.09
CDKN2A-201ENST00000304494 DENND4CQ5VZ89 1909 aa28.1■■■□□ 2.09
CDKN2A-201ENST00000304494 PROB1E7EW31 1015 aa28.1■■■□□ 2.09
CDKN2A-201ENST00000304494 CKMP06732 381 aa28.1■■■□□ 2.09
CDKN2A-201ENST00000304494 PFKLP17858 780 aa28.1■■■□□ 2.09
CDKN2A-201ENST00000304494 NDST1P52848 882 aa28.1■■■□□ 2.09
CDKN2A-201ENST00000304494 CACNA2D1P54289 1103 aa28.1■■■□□ 2.09
CDKN2A-201ENST00000304494 ACOT1Q86TX2 421 aa28.1■■■□□ 2.09
CDKN2A-201ENST00000304494 FAM35AQ86V20 835 aa28.1■■■□□ 2.09
CDKN2A-201ENST00000304494 ZC3H3Q8IXZ2 948 aaKnown RBP28.1■■■□□ 2.09
CDKN2A-201ENST00000304494 CRYBG2Q8N1P7 616 aa28.1■■■□□ 2.09
CDKN2A-201ENST00000304494 SMARCD1Q96GM5 515 aa28.1■■■□□ 2.09
CDKN2A-201ENST00000304494 DNAI2Q9GZS0 605 aa28.1■■■□□ 2.09
CDKN2A-201ENST00000304494 NIF3L1Q9GZT8 377 aa28.1■■■□□ 2.09
CDKN2A-201ENST00000304494 SPATA6Q9NWH7 488 aaPredicted RBP28.1■■■□□ 2.09
CDKN2A-201ENST00000304494 CHMP5Q9NZZ3 219 aa28.1■■■□□ 2.09
CDKN2A-201ENST00000304494 MAN1B1Q9UKM7 699 aa28.1■■■□□ 2.09
CDKN2A-201ENST00000304494 GADD45BO75293 160 aaPredicted RBP28.09■■■□□ 2.09
CDKN2A-201ENST00000304494 CCNE1P24864 410 aa28.09■■■□□ 2.09
CDKN2A-201ENST00000304494 MXI1P50539 228 aa28.09■■■□□ 2.09
CDKN2A-201ENST00000304494 USP46P62068 366 aa28.09■■■□□ 2.09
CDKN2A-201ENST00000304494 CC2D1AQ6P1N0 951 aaPredicted RBP28.09■■■□□ 2.09
CDKN2A-201ENST00000304494 RALGPS2Q86X27 583 aaPredicted RBP28.09■■■□□ 2.09
CDKN2A-201ENST00000304494 ZNF687Q8N1G0 1237 aa28.09■■■□□ 2.09
CDKN2A-201ENST00000304494 DHTKD1Q96HY7 919 aaPredicted RBP28.09■■■□□ 2.09
CDKN2A-201ENST00000304494 GTSE1Q9NYZ3 720 aa28.09■■■□□ 2.09
CDKN2A-201ENST00000304494 INCA1Q0VD86 236 aa28.08■■■□□ 2.09
CDKN2A-201ENST00000304494 ITPRIPL2Q3MIP1 535 aa28.08■■■□□ 2.09
CDKN2A-201ENST00000304494 NUP93Q8N1F7 819 aa28.08■■■□□ 2.09
CDKN2A-201ENST00000304494 FBXL13Q8NEE6 735 aa28.08■■■□□ 2.09
CDKN2A-201ENST00000304494 FAXDC2Q96IV6 333 aa28.08■■■□□ 2.09
CDKN2A-201ENST00000304494 SLITRK1Q96PX8 696 aa28.08■■■□□ 2.09
CDKN2A-201ENST00000304494 IER2Q9BTL4 223 aa28.08■■■□□ 2.09
CDKN2A-201ENST00000304494 APOBEC3GQ9HC16 384 aaKnown RBP28.08■■■□□ 2.09
CDKN2A-201ENST00000304494 DMAP1Q9NPF5 467 aaPredicted RBP28.08■■■□□ 2.09
CDKN2A-201ENST00000304494 UTP3Q9NQZ2 479 aaKnown RBP eCLIP28.08■■■□□ 2.09
CDKN2A-201ENST00000304494 GKN1Q9NS71 199 aa28.08■■■□□ 2.09
CDKN2A-201ENST00000304494 TMEM30AQ9NV96 361 aa28.08■■■□□ 2.09
CDKN2A-201ENST00000304494 GCNT4Q9P109 453 aa28.08■■■□□ 2.09
CDKN2A-201ENST00000304494 MYO15AQ9UKN7 3530 aa28.07■■■□□ 2.08
CDKN2A-201ENST00000304494 SPECC1L-ADORA2AF8WAN1 911 aa28.07■■■□□ 2.08
CDKN2A-201ENST00000304494 LAMTOR5O43504 91 aa28.07■■■□□ 2.08
CDKN2A-201ENST00000304494 RTN3O95197 1032 aaPredicted RBP28.07■■■□□ 2.08
CDKN2A-201ENST00000304494 HDCP19113 662 aa28.07■■■□□ 2.08
CDKN2A-201ENST00000304494 PMS1P54277 932 aaKnown RBP28.07■■■□□ 2.08
CDKN2A-201ENST00000304494 FZD5Q13467 585 aa28.07■■■□□ 2.08
CDKN2A-201ENST00000304494 DCAF17Q5H9S7 520 aaPredicted RBP28.07■■■□□ 2.08
CDKN2A-201ENST00000304494 TCERG1LQ5VWI1 586 aa28.07■■■□□ 2.08
CDKN2A-201ENST00000304494 ISM2Q6H9L7 571 aa28.07■■■□□ 2.08
CDKN2A-201ENST00000304494 FUKQ8N0W3 1084 aa28.07■■■□□ 2.08
CDKN2A-201ENST00000304494 ARL14EPQ8N8R7 260 aaPredicted RBP28.07■■■□□ 2.08
CDKN2A-201ENST00000304494 CYP2S1Q96SQ9 504 aa28.07■■■□□ 2.08
CDKN2A-201ENST00000304494 FAM83CQ9BQN1 747 aa28.07■■■□□ 2.08
CDKN2A-201ENST00000304494 RAB20Q9NX57 234 aa28.07■■■□□ 2.08
CDKN2A-201ENST00000304494 HMGXB4Q9UGU5 601 aa28.07■■■□□ 2.08
CDKN2A-201ENST00000304494 CACNA1HO95180 2353 aa28.07■■■□□ 2.08
CDKN2A-201ENST00000304494 GREB1Q4ZG55 1949 aa28.06■■■□□ 2.08
CDKN2A-201ENST00000304494 C2orf78A6NCI8 922 aa28.06■■■□□ 2.08
CDKN2A-201ENST00000304494 TRIM49BA6NDI0 452 aa28.06■■■□□ 2.08
CDKN2A-201ENST00000304494 CTHP32929 405 aa28.06■■■□□ 2.08
CDKN2A-201ENST00000304494 SOX9P48436 509 aa28.06■■■□□ 2.08
CDKN2A-201ENST00000304494 TNK2Q07912 1038 aa28.06■■■□□ 2.08
CDKN2A-201ENST00000304494 ORC1Q13415 861 aa28.06■■■□□ 2.08
CDKN2A-201ENST00000304494 PAQR9Q6ZVX9 377 aa28.06■■■□□ 2.08
CDKN2A-201ENST00000304494 PDZD8Q8NEN9 1154 aa28.06■■■□□ 2.08
CDKN2A-201ENST00000304494 TTC8Q8TAM2 541 aa28.06■■■□□ 2.08
CDKN2A-201ENST00000304494 SLC22A12Q96S37 553 aa28.06■■■□□ 2.08
CDKN2A-201ENST00000304494 KCNK16Q96T55 309 aa28.06■■■□□ 2.08
CDKN2A-201ENST00000304494 NT5C1AQ9BXI3 368 aa28.06■■■□□ 2.08
CDKN2A-201ENST00000304494 KRT82Q9NSB4 513 aa28.06■■■□□ 2.08
CDKN2A-201ENST00000304494 FBXO4Q9UKT5 387 aa28.06■■■□□ 2.08
CDKN2A-201ENST00000304494 ZNF840PA6NDX5 716 aa28.05■■■□□ 2.08
CDKN2A-201ENST00000304494 AP1G2O75843 785 aa28.05■■■□□ 2.08
CDKN2A-201ENST00000304494 YWHAQP27348 245 aa28.05■■■□□ 2.08
CDKN2A-201ENST00000304494 UBE2HP62256 183 aa28.05■■■□□ 2.08
CDKN2A-201ENST00000304494 TAF10Q12962 218 aa28.05■■■□□ 2.08
CDKN2A-201ENST00000304494 MTF1Q14872 753 aa28.05■■■□□ 2.08
CDKN2A-201ENST00000304494 PDGFRLQ15198 375 aa28.05■■■□□ 2.08
CDKN2A-201ENST00000304494 WDR44Q5JSH3 913 aa28.05■■■□□ 2.08
CDKN2A-201ENST00000304494 FRMD5Q7Z6J6 570 aa28.05■■■□□ 2.08
CDKN2A-201ENST00000304494 TTC39CQ8N584 583 aa28.05■■■□□ 2.08
CDKN2A-201ENST00000304494 SLC2A14Q8TDB8 520 aa28.05■■■□□ 2.08
CDKN2A-201ENST00000304494 OVCA2Q8WZ82 227 aa28.05■■■□□ 2.08
CDKN2A-201ENST00000304494 LMAN1LQ9HAT1 526 aa28.05■■■□□ 2.08
CDKN2A-201ENST00000304494 ARMCX3Q9UH62 379 aaPredicted RBP28.05■■■□□ 2.08
CDKN2A-201ENST00000304494 ARHGAP26Q9UNA1 814 aa28.05■■■□□ 2.08
CDKN2A-201ENST00000304494 SP9P0CG40 484 aa28.04■■■□□ 2.08
CDKN2A-201ENST00000304494 CCDC130P13994 396 aa28.04■■■□□ 2.08
CDKN2A-201ENST00000304494 ANP32AP39687 249 aaKnown RBP28.04■■■□□ 2.08
CDKN2A-201ENST00000304494 IFRD2Q12894 506 aaPredicted RBP28.04■■■□□ 2.08
CDKN2A-201ENST00000304494 USP4Q13107 963 aa28.04■■■□□ 2.08
CDKN2A-201ENST00000304494 RUNX3Q13761 415 aa28.04■■■□□ 2.08
CDKN2A-201ENST00000304494 LRRC32Q14392 662 aa28.04■■■□□ 2.08
CDKN2A-201ENST00000304494 ZNF77Q15935 545 aa28.04■■■□□ 2.08
CDKN2A-201ENST00000304494 ZC3H14Q6PJT7 736 aaKnown RBP28.04■■■□□ 2.08
CDKN2A-201ENST00000304494 CEP63Q96MT8 703 aa28.04■■■□□ 2.08
CDKN2A-201ENST00000304494 CHRDQ9H2X0 955 aa28.04■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms