RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 FAM86C2PA6NEL3 165 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 NRG2O14511 850 aaPredicted RBP6.91□□□□□ -1.3
CD44-204ENST00000279452 THAP12O43422 761 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 NARSO43776 548 aaKnown RBP6.91□□□□□ -1.3
CD44-204ENST00000279452 BEST1O76090 585 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 RTN3O95197 1032 aaPredicted RBP6.91□□□□□ -1.3
CD44-204ENST00000279452 PAPLNO95428 1278 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 SERPINC1P01008 464 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 CALCAP01258 141 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 VDRP11473 427 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 ATP1A3P13637 1013 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 HMGA1P17096 107 aaKnown RBP6.91□□□□□ -1.3
CD44-204ENST00000279452 NPR3P17342 541 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 ACO1P21399 889 aaKnown RBP6.91□□□□□ -1.3
CD44-204ENST00000279452 GNA15P30679 374 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 VIPR2P41587 438 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 BCAT1P54687 386 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 MCCD1P59942 119 aaPredicted RBP6.91□□□□□ -1.3
CD44-204ENST00000279452 USP46P62068 366 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 UBXN1Q04323 297 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 TAF10Q12962 218 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 TDGQ13569 410 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 HTR4Q13639 388 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 FILIP1LQ4L180 1135 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 TXNDC8Q6A555 127 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 PHLDB3Q6NSJ2 640 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 CLEC20AQ6ZU45 233 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 PAQR9Q6ZVX9 377 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 GAREM2Q75VX8 874 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 LUZP1Q86V48 1076 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 DHX40Q8IX18 779 aaKnown RBP6.91□□□□□ -1.3
CD44-204ENST00000279452 NUP93Q8N1F7 819 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 LMO3Q8TAP4 145 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 UBA3Q8TBC4 463 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 FGF14Q92915 247 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 SMARCD2Q92925 531 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 KHSRPQ92945 711 aaKnown RBP eCLIP6.91□□□□□ -1.3
CD44-204ENST00000279452 TRMT2BQ96GJ1 504 aaKnown RBP6.91□□□□□ -1.3
CD44-204ENST00000279452 SPATA17Q96L03 361 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 ZSWIM3Q96MP5 696 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 KREMEN1Q96MU8 473 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 HNRNPABQ99729 332 aaKnown RBP6.91□□□□□ -1.3
CD44-204ENST00000279452 SMOQ99835 787 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 BPIFA3Q9BQP9 254 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 LRRC3Q9BY71 257 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 GPR88Q9GZN0 384 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 SMG9Q9H0W8 520 aaKnown RBP6.91□□□□□ -1.3
CD44-204ENST00000279452 PDCL3Q9H2J4 239 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 MFSD1Q9H3U5 465 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 FAM124BQ9H5Z6 455 aaPredicted RBP6.91□□□□□ -1.3
CD44-204ENST00000279452 EPHX3Q9H6B9 360 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 TASP1Q9H6P5 420 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 IL21Q9HBE4 155 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 LRRC4Q9HBW1 653 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 CBX8Q9HC52 389 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 AVENQ9NQS1 362 aaPredicted RBP6.91□□□□□ -1.3
CD44-204ENST00000279452 FAM207AQ9NSI2 230 aaPredicted RBP6.91□□□□□ -1.3
CD44-204ENST00000279452 TMEM30AQ9NV96 361 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 DNAJC12Q9UKB3 198 aa6.91□□□□□ -1.3
CD44-204ENST00000279452 TCF20Q9UGU0 1960 aaKnown RBP6.91□□□□□ -1.3
CD44-204ENST00000279452 DENND4AQ7Z401 1863 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 C2orf16Q68DN1 1984 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 FAM170AA1A519 330 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 GTPBP10A4D1E9 387 aaKnown RBP6.9□□□□□ -1.3
CD44-204ENST00000279452 C2orf78A6NCI8 922 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 LGALS16A8MUM7 142 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 HEPACAM2A8MVW5 462 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 PIK3R2O00459 728 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 STK25O00506 426 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 CYP26A1O43174 497 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 MED7O43513 233 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 MOSPD3O75425 235 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 TADA3O75528 432 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 MICAL2O94851 1124 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 F11P03951 625 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 PAEPP09466 180 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 USP17L7P0C7H9 530 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 PNMA6AP0CW24 399 aaPredicted RBP6.9□□□□□ -1.3
CD44-204ENST00000279452 MBL2P11226 248 aaPredicted RBP6.9□□□□□ -1.3
CD44-204ENST00000279452 LCP1P13796 627 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 DDX6P26196 483 aaKnown RBP eCLIP6.9□□□□□ -1.3
CD44-204ENST00000279452 RGS7P49802 495 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 KLK7P49862 253 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 PDE6CP51160 858 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 POLR2FP61218 127 aaKnown RBP6.9□□□□□ -1.3
CD44-204ENST00000279452 ZXDAP98168 799 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 PDE4CQ08493 712 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 BST2Q10589 180 aaKnown RBP6.9□□□□□ -1.3
CD44-204ENST00000279452 NCAPHQ15003 741 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 SYCP1Q15431 976 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 ARHGAP17Q68EM7 881 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 TANGO2Q6ICL3 276 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 CC2D1AQ6P1N0 951 aaPredicted RBP6.9□□□□□ -1.3
CD44-204ENST00000279452 GPRIN1Q7Z2K8 1008 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 PIGZQ86VD9 579 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 ARID3BQ8IVW6 561 aaPredicted RBP6.9□□□□□ -1.3
CD44-204ENST00000279452 UBALD2Q8IYN6 164 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 CMTM8Q8IZV2 173 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 SIX6OS1Q8N1H7 587 aa6.9□□□□□ -1.3
CD44-204ENST00000279452 SLC44A3Q8N4M1 653 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms