RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 FAM13BQ9NYF5 915 aa13.63□□□□□ -0.23
CD44-203ENST00000278386 TRPM5Q9NZQ8 1165 aa13.63□□□□□ -0.23
CD44-203ENST00000278386 MYOFQ9NZM1 2061 aa13.63□□□□□ -0.23
CD44-203ENST00000278386 AXIN1O15169 862 aa13.62□□□□□ -0.23
CD44-203ENST00000278386 NFATC1O95644 943 aa13.62□□□□□ -0.23
CD44-203ENST00000278386 ABL1P00519 1130 aa13.62□□□□□ -0.23
CD44-203ENST00000278386 HDCP19113 662 aa13.62□□□□□ -0.23
CD44-203ENST00000278386 HOXA6P31267 233 aa13.62□□□□□ -0.23
CD44-203ENST00000278386 ME1P48163 572 aa13.62□□□□□ -0.23
CD44-203ENST00000278386 GALK1P51570 392 aa13.62□□□□□ -0.23
CD44-203ENST00000278386 NR1H3Q13133 447 aa13.62□□□□□ -0.23
CD44-203ENST00000278386 PSMD6Q15008 389 aa13.62□□□□□ -0.23
CD44-203ENST00000278386 CSRP2Q16527 193 aa13.62□□□□□ -0.23
CD44-203ENST00000278386 EML3Q32P44 896 aa13.62□□□□□ -0.23
CD44-203ENST00000278386 WDR72Q3MJ13 1102 aa13.62□□□□□ -0.23
CD44-203ENST00000278386 FBXO43Q4G163 708 aa13.62□□□□□ -0.23
CD44-203ENST00000278386 AASDHQ4L235 1098 aaPredicted RBP13.62□□□□□ -0.23
CD44-203ENST00000278386 LIMS2Q7Z4I7 341 aa13.62□□□□□ -0.23
CD44-203ENST00000278386 HSCBQ8IWL3 235 aa13.62□□□□□ -0.23
CD44-203ENST00000278386 MYCBPAPQ8TBZ2 947 aa13.62□□□□□ -0.23
CD44-203ENST00000278386 ZNF507Q8TCN5 953 aa13.62□□□□□ -0.23
CD44-203ENST00000278386 SCFD1Q8WVM8 642 aa13.62□□□□□ -0.23
CD44-203ENST00000278386 ACDQ96AP0 544 aa13.62□□□□□ -0.23
CD44-203ENST00000278386 C7orf25Q9BPX7 421 aa13.62□□□□□ -0.23
CD44-203ENST00000278386 EHD2Q9NZN4 543 aa13.62□□□□□ -0.23
CD44-203ENST00000278386 GCNT4Q9P109 453 aa13.62□□□□□ -0.23
CD44-203ENST00000278386 SPTBN2O15020 2390 aa13.62□□□□□ -0.23
CD44-203ENST00000278386 NUP205Q92621 2012 aa13.62□□□□□ -0.23
CD44-203ENST00000278386 NCOR2Q9Y618 2525 aa13.61□□□□□ -0.23
CD44-203ENST00000278386 F8VP50 259 aa13.61□□□□□ -0.23
CD44-203ENST00000278386 TGFB1I1O43294 461 aa13.61□□□□□ -0.23
CD44-203ENST00000278386 PHACTR2O75167 634 aa13.61□□□□□ -0.23
CD44-203ENST00000278386 GNL1P36915 607 aaPredicted RBP13.61□□□□□ -0.23
CD44-203ENST00000278386 AFMP43652 599 aa13.61□□□□□ -0.23
CD44-203ENST00000278386 USP46P62068 366 aa13.61□□□□□ -0.23
CD44-203ENST00000278386 BIRC3Q13489 604 aa13.61□□□□□ -0.23
CD44-203ENST00000278386 CNNM4Q6P4Q7 775 aa13.61□□□□□ -0.23
CD44-203ENST00000278386 CACNA2D4Q7Z3S7 1137 aa13.61□□□□□ -0.23
CD44-203ENST00000278386 CEP57L1Q8IYX8 460 aa13.61□□□□□ -0.23
CD44-203ENST00000278386 C12orf50Q8NA57 414 aaPredicted RBP13.61□□□□□ -0.23
CD44-203ENST00000278386 ELOVL4Q9GZR5 314 aa13.61□□□□□ -0.23
CD44-203ENST00000278386 ARRDC1-AS1Q9H2J1 176 aa13.61□□□□□ -0.23
CD44-203ENST00000278386 DPEP3Q9H4B8 488 aa13.61□□□□□ -0.23
CD44-203ENST00000278386 FBRSL1Q9HCM7 1045 aaKnown RBP13.61□□□□□ -0.23
CD44-203ENST00000278386 SLC39A2Q9NP94 309 aa13.61□□□□□ -0.23
CD44-203ENST00000278386 POLR3BQ9NW08 1133 aaPredicted RBP13.61□□□□□ -0.23
CD44-203ENST00000278386 NXF1Q9UBU9 619 aaKnown RBP13.61□□□□□ -0.23
CD44-203ENST00000278386 ARHGAP26Q9UNA1 814 aa13.61□□□□□ -0.23
CD44-203ENST00000278386 THADAQ6YHU6 1953 aa13.61□□□□□ -0.23
CD44-203ENST00000278386 ATP8B3O60423 1300 aa13.61□□□□□ -0.23
CD44-203ENST00000278386 CCDC163A0A0D9SF12 145 aa13.6□□□□□ -0.23
CD44-203ENST00000278386 A8MXQ7 604 aa13.6□□□□□ -0.23
CD44-203ENST00000278386 SLC30A4O14863 429 aa13.6□□□□□ -0.23
CD44-203ENST00000278386 GDF9O60383 454 aa13.6□□□□□ -0.23
CD44-203ENST00000278386 FOXD2O60548 495 aaPredicted RBP13.6□□□□□ -0.23
CD44-203ENST00000278386 EXOC3O60645 756 aa13.6□□□□□ -0.23
CD44-203ENST00000278386 TACC1O75410 805 aa13.6□□□□□ -0.23
CD44-203ENST00000278386 EPN2O95208 641 aa13.6□□□□□ -0.23
CD44-203ENST00000278386 F13A1P00488 732 aa13.6□□□□□ -0.23
CD44-203ENST00000278386 CST3P01034 146 aaPredicted RBP13.6□□□□□ -0.23
CD44-203ENST00000278386 ZSCAN22P10073 491 aaPredicted RBP13.6□□□□□ -0.23
CD44-203ENST00000278386 SEC13P55735 322 aa13.6□□□□□ -0.23
CD44-203ENST00000278386 SNRPFP62306 86 aaKnown RBP13.6□□□□□ -0.23
CD44-203ENST00000278386 DMC1Q14565 340 aa13.6□□□□□ -0.23
CD44-203ENST00000278386 CCDC6Q16204 474 aa13.6□□□□□ -0.23
CD44-203ENST00000278386 SCARA5Q6ZMJ2 495 aa13.6□□□□□ -0.23
CD44-203ENST00000278386 KBTBD6Q86V97 674 aa13.6□□□□□ -0.23
CD44-203ENST00000278386 GRAMD1CQ8IYS0 662 aa13.6□□□□□ -0.23
CD44-203ENST00000278386 CAMKK1Q8N5S9 505 aa13.6□□□□□ -0.23
CD44-203ENST00000278386 CEP295NLQ96MC4 621 aa13.6□□□□□ -0.23
CD44-203ENST00000278386 ZNF518BQ9C0D4 1074 aa13.6□□□□□ -0.23
CD44-203ENST00000278386 NME7Q9Y5B8 376 aa13.6□□□□□ -0.23
CD44-203ENST00000278386 CPQQ9Y646 472 aa13.6□□□□□ -0.23
CD44-203ENST00000278386 LEFTY2O00292 366 aa13.59□□□□□ -0.23
CD44-203ENST00000278386 CLDN5O00501 218 aa13.59□□□□□ -0.23
CD44-203ENST00000278386 SCAMP3O14828 347 aaKnown RBP13.59□□□□□ -0.23
CD44-203ENST00000278386 TCF3P15923 654 aa13.59□□□□□ -0.23
CD44-203ENST00000278386 PFKLP17858 780 aa13.59□□□□□ -0.23
CD44-203ENST00000278386 PTPN1P18031 435 aaKnown RBP13.59□□□□□ -0.23
CD44-203ENST00000278386 CASP4P49662 377 aa13.59□□□□□ -0.23
CD44-203ENST00000278386 MYL6P60660 151 aa13.59□□□□□ -0.23
CD44-203ENST00000278386 NOP14P78316 857 aaKnown RBP13.59□□□□□ -0.23
CD44-203ENST00000278386 EHHADHQ08426 723 aa13.59□□□□□ -0.23
CD44-203ENST00000278386 CUL4BQ13620 913 aa13.59□□□□□ -0.23
CD44-203ENST00000278386 SF3A2Q15428 464 aaKnown RBP13.59□□□□□ -0.23
CD44-203ENST00000278386 BMT2Q1RMZ1 405 aa13.59□□□□□ -0.23
CD44-203ENST00000278386 ZNF699Q32M78 642 aa13.59□□□□□ -0.23
CD44-203ENST00000278386 PPM1JQ5JR12 505 aa13.59□□□□□ -0.23
CD44-203ENST00000278386 TDRD10Q5VZ19 366 aaKnown RBP13.59□□□□□ -0.23
CD44-203ENST00000278386 B3GALNT2Q8NCR0 500 aa13.59□□□□□ -0.23
CD44-203ENST00000278386 SYAP1Q96A49 352 aaPredicted RBP13.59□□□□□ -0.23
CD44-203ENST00000278386 C8orf48Q96LL4 319 aa13.59□□□□□ -0.23
CD44-203ENST00000278386 SLITRK1Q96PX8 696 aa13.59□□□□□ -0.23
CD44-203ENST00000278386 MED10Q9BTT4 135 aa13.59□□□□□ -0.23
CD44-203ENST00000278386 TTLL2Q9BWV7 592 aa13.59□□□□□ -0.23
CD44-203ENST00000278386 SMYD3Q9H7B4 428 aa13.59□□□□□ -0.23
CD44-203ENST00000278386 EXOC1Q9NV70 894 aa13.59□□□□□ -0.23
CD44-203ENST00000278386 SMPD4Q9NXE4 827 aa13.59□□□□□ -0.23
CD44-203ENST00000278386 CGNQ9P2M7 1197 aaKnown RBP13.59□□□□□ -0.23
CD44-203ENST00000278386 PCDHA7Q9UN72 937 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms