RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 YIPF3Q9GZM5 350 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 RNPEPL1Q9HAU8 725 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 ARL8BQ9NVJ2 186 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 HEY2Q9UBP5 337 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 POLIQ9UNA4 740 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 LOC285556D6RIA3 1793 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 GEMIN4P57678 1058 aaKnown RBP10.53□□□□□ -0.72
LIG3-201ENST00000262327 MMRN1Q13201 1228 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 ABHD15Q6UXT9 468 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 DSTYKQ6XUX3 929 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 FASTKD5Q7L8L6 764 aaKnown RBP10.53□□□□□ -0.72
LIG3-201ENST00000262327 RELL1Q8IUW5 271 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 THNSL1Q8IYQ7 743 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 CCDC33Q8N5R6 958 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 MAB21L3Q8N8X9 362 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 RSAD2Q8WXG1 361 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 NAF1Q96HR8 494 aaKnown RBP10.53□□□□□ -0.72
LIG3-201ENST00000262327 TTC25Q96NG3 672 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 FAM111AQ96PZ2 611 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 CALN1Q9BXU9 219 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 ARMCX1Q9P291 453 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 CYTH4Q9UIA0 394 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 CNTNAP2Q9UHC6 1331 aa10.53□□□□□ -0.72
LIG3-201ENST00000262327 RLFQ13129 1914 aa10.52□□□□□ -0.72
LIG3-201ENST00000262327 GJB1P08034 283 aa10.52□□□□□ -0.72
LIG3-201ENST00000262327 KRT19P08727 400 aa10.52□□□□□ -0.72
LIG3-201ENST00000262327 TPBGLP0DKB5 382 aa10.52□□□□□ -0.72
LIG3-201ENST00000262327 CNTN2Q02246 1040 aa10.52□□□□□ -0.72
LIG3-201ENST00000262327 ZBTB16Q05516 673 aa10.52□□□□□ -0.72
LIG3-201ENST00000262327 KHDC1Q4VXA5 237 aaKnown RBP10.52□□□□□ -0.72
LIG3-201ENST00000262327 TRIM72Q6ZMU5 477 aa10.52□□□□□ -0.72
LIG3-201ENST00000262327 MOB2Q70IA6 237 aa10.52□□□□□ -0.72
LIG3-201ENST00000262327 RIBC1Q8N443 379 aaPredicted RBP10.52□□□□□ -0.72
LIG3-201ENST00000262327 OTUD5Q96G74 571 aa10.52□□□□□ -0.72
LIG3-201ENST00000262327 CGRRF1Q99675 332 aa10.52□□□□□ -0.72
LIG3-201ENST00000262327 ZNF395Q9H8N7 513 aaPredicted RBP10.52□□□□□ -0.72
LIG3-201ENST00000262327 C17orf75Q9HAS0 396 aa10.52□□□□□ -0.72
LIG3-201ENST00000262327 PRDM16Q9HAZ2 1276 aa10.52□□□□□ -0.72
LIG3-201ENST00000262327 XPO7Q9UIA9 1087 aaKnown RBP10.52□□□□□ -0.72
LIG3-201ENST00000262327 SMG5Q9UPR3 1016 aaKnown RBP10.52□□□□□ -0.72
LIG3-201ENST00000262327 MAGEB2O15479 319 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 CSDE1O75534 798 aaKnown RBP10.52□□□□□ -0.73
LIG3-201ENST00000262327 DCTN3O75935 186 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 BGNP21810 368 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 CALB2P22676 271 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 SERPINB3P29508 390 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 PTPN20Q4JDL3 420 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 SH3PXD2AQ5TCZ1 1133 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 LBX2Q6XYB7 198 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 CLNKQ7Z7G1 428 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 RFX6Q8HWS3 928 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 LRRC71Q8N4P6 559 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 OPTNQ96CV9 577 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 SLC10A4Q96EP9 437 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 TRIM56Q9BRZ2 755 aaKnown RBP10.52□□□□□ -0.73
LIG3-201ENST00000262327 LMCD1Q9NZU5 365 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 A0A0B4J269 797 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 CCDC195A0A1B0GUA6 201 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 SPDYE16A6NNV3 312 aaPredicted RBP10.52□□□□□ -0.73
LIG3-201ENST00000262327 GRAP2O75791 330 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 PTDSS1P48651 473 aaKnown RBP10.52□□□□□ -0.73
LIG3-201ENST00000262327 TUBP50607 506 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 YWHAGP61981 247 aaKnown RBP eCLIP10.52□□□□□ -0.73
LIG3-201ENST00000262327 CLDN10P78369 228 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 CCDC15Q0P6D6 951 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 XKR3Q5GH77 459 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 CAPRIN2Q6IMN6 1127 aaKnown RBP10.52□□□□□ -0.73
LIG3-201ENST00000262327 AGGF1Q8N302 714 aaeCLIP10.52□□□□□ -0.73
LIG3-201ENST00000262327 TMEM35BQ8NCS4 154 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 NSUN6Q8TEA1 469 aaKnown RBP10.52□□□□□ -0.73
LIG3-201ENST00000262327 STK32AQ8WU08 396 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 GPRASP2Q96D09 838 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 VCPIP1Q96JH7 1222 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 SERAC1Q96JX3 654 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 PPP1R16BQ96T49 567 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 MECRQ9BV79 373 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 OSBPL1AQ9BXW6 950 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 SYNCQ9H7C4 482 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 PCDH9Q9HC56 1237 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 ZNF302Q9NR11 478 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 CYP39A1Q9NYL5 469 aa10.52□□□□□ -0.73
LIG3-201ENST00000262327 F5H423 210 aaPredicted RBP10.51□□□□□ -0.73
LIG3-201ENST00000262327 LRCH4O75427 683 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 STAM2O75886 525 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 SUPT20HL2P0C7V6 817 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 KITP10721 976 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 GNAZP19086 355 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 ELK3P41970 407 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 SKIV2L2P42285 1042 aaKnown RBP10.51□□□□□ -0.73
LIG3-201ENST00000262327 FAAP100Q0VG06 881 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 CAPSQ13938 189 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 TMEM132BQ14DG7 1078 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 CDO1Q16878 200 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 EFHC2Q5JST6 749 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 FYB2Q5VWT5 728 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 GADL1Q6ZQY3 521 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 CTAGE3PQ8IX95 158 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 SLC7A3Q8WY07 619 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 CFAP36Q96G28 342 aa10.51□□□□□ -0.73
LIG3-201ENST00000262327 TEX13BQ9BXU2 312 aa10.51□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms