RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 ADAM22Q9P0K1 906 aa9.15□□□□□ -0.95
VPS4B-201ENST00000238497 PLAAQ9Y263 795 aa9.15□□□□□ -0.95
VPS4B-201ENST00000238497 DAAM1Q9Y4D1 1078 aa9.15□□□□□ -0.95
VPS4B-201ENST00000238497 PTPRJQ12913 1337 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 RTN2O75298 545 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 PYGMP11217 842 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 MYL6P60660 151 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 DR1Q01658 176 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 PDCLQ13371 301 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 NNTQ13423 1086 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 WDR72Q3MJ13 1102 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 TDRD10Q5VZ19 366 aaKnown RBP9.14□□□□□ -0.95
VPS4B-201ENST00000238497 PRUNE1Q86TP1 453 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 EFHBQ8N7U6 833 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 COLEC11Q9BWP8 271 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 MRPL4Q9BYD3 311 aaKnown RBP9.14□□□□□ -0.95
VPS4B-201ENST00000238497 PDZD7Q9H5P4 517 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 CDH22Q9UJ99 828 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 GIT1Q9Y2X7 761 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.14□□□□□ -0.95
VPS4B-201ENST00000238497 GRXCR2A6NFK2 248 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 ATP2C2O75185 946 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 SYF2O95926 243 aaKnown RBP9.14□□□□□ -0.95
VPS4B-201ENST00000238497 IFNB1P01574 187 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 SPATA31D3P0C874 917 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 PRLRP16471 622 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 BRD2P25440 801 aaKnown RBP9.14□□□□□ -0.95
VPS4B-201ENST00000238497 NOP14P78316 857 aaKnown RBP9.14□□□□□ -0.95
VPS4B-201ENST00000238497 FMO1Q01740 532 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 POU5F1BQ06416 359 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 ADAM15Q13444 863 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 KRT71Q3SY84 523 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 RARS2Q5T160 578 aaKnown RBP9.14□□□□□ -0.95
VPS4B-201ENST00000238497 CYP4A22Q5TCH4 519 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 CES5AQ6NT32 575 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 TMC5Q6UXY8 1006 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 ZNF662Q6ZS27 426 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 SPATA31D4Q6ZUB0 917 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 MRPL10Q7Z7H8 261 aaKnown RBP9.14□□□□□ -0.95
VPS4B-201ENST00000238497 MRPL43Q8N983 215 aaKnown RBP9.14□□□□□ -0.95
VPS4B-201ENST00000238497 LRRC57Q8N9N7 239 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 BCL7CQ8WUZ0 217 aaPredicted RBP9.14□□□□□ -0.95
VPS4B-201ENST00000238497 TRAIPQ9BWF2 469 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 FZD8Q9H461 694 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 PPANQ9NQ55 473 aaKnown RBP9.14□□□□□ -0.95
VPS4B-201ENST00000238497 MRPL17Q9NRX2 175 aaKnown RBP9.14□□□□□ -0.95
VPS4B-201ENST00000238497 ZKSCAN7Q9P0L1 754 aaPredicted RBP9.14□□□□□ -0.95
VPS4B-201ENST00000238497 HCFC2Q9Y5Z7 792 aa9.14□□□□□ -0.95
VPS4B-201ENST00000238497 TARSL2A2RTX5 802 aaKnown RBP9.13□□□□□ -0.95
VPS4B-201ENST00000238497 CCDC66A2RUB6 948 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 EXTL3O43909 919 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 EDN1P05305 212 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 THP07101 528 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 CHRNB2P17787 502 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 GNGT1P63211 74 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 ATP13A4Q4VNC1 1196 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 SYCP2LQ5T4T6 812 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 B4GALNT4Q76KP1 1039 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 SLC9A9Q8IVB4 645 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 FBXL5Q9UKA1 691 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 UBE4BO95155 1302 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 OPA1O60313 960 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 PDE12Q6L8Q7 609 aaKnown RBP9.13□□□□□ -0.95
VPS4B-201ENST00000238497 FOXR2Q6PJQ5 311 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 IFNLR1Q8IU57 520 aaPredicted RBP9.13□□□□□ -0.95
VPS4B-201ENST00000238497 RHOT2Q8IXI1 618 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 EMILIN2Q9BXX0 1053 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 HAPLN2Q9GZV7 340 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 NEUROG2Q9H2A3 272 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 LZTS1Q9Y250 596 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 USP15Q9Y4E8 981 aaPredicted RBP9.13□□□□□ -0.95
VPS4B-201ENST00000238497 NUB1Q9Y5A7 615 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 MUC6Q6W4X9 2439 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 FAM86C2PA6NEL3 165 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 C2orf71A6NGG8 1288 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 O00370 1275 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 HGSO14964 777 aaPredicted RBP9.13□□□□□ -0.95
VPS4B-201ENST00000238497 MBTPS2O43462 519 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 B3GAT3O94766 335 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 EPCAMP16422 314 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 CTNNA2P26232 953 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 GTF2H1P32780 548 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 DUSP6Q16828 381 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 CDCA2Q69YH5 1023 aaPredicted RBP9.13□□□□□ -0.95
VPS4B-201ENST00000238497 KCTD17Q8N5Z5 321 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 RBBP8NLQ8NC74 664 aaPredicted RBP9.13□□□□□ -0.95
VPS4B-201ENST00000238497 NFKBIZQ9BYH8 718 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 CD320Q9NPF0 282 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 RNF14Q9UBS8 474 aa9.13□□□□□ -0.95
VPS4B-201ENST00000238497 PTPRZ1P23471 2315 aaPredicted RBP9.12□□□□□ -0.95
VPS4B-201ENST00000238497 GLP2RO95838 553 aa9.12□□□□□ -0.95
VPS4B-201ENST00000238497 CXCL8P10145 99 aa9.12□□□□□ -0.95
VPS4B-201ENST00000238497 RPL17P18621 184 aaKnown RBP9.12□□□□□ -0.95
VPS4B-201ENST00000238497 CDR2Q01850 454 aa9.12□□□□□ -0.95
VPS4B-201ENST00000238497 GUCY1A3Q02108 690 aa9.12□□□□□ -0.95
VPS4B-201ENST00000238497 SMAD4Q13485 552 aaKnown RBP9.12□□□□□ -0.95
VPS4B-201ENST00000238497 PUS10Q3MIT2 529 aaKnown RBP9.12□□□□□ -0.95
VPS4B-201ENST00000238497 SGO2Q562F6 1265 aa9.12□□□□□ -0.95
VPS4B-201ENST00000238497 DCAF12L1Q5VU92 463 aa9.12□□□□□ -0.95
VPS4B-201ENST00000238497 FAM171A1Q5VUB5 890 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms